Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 ANKRD31-201ENST00000274361 6036 ntAPPRIS P2 TSL 5 BASIC7.56□□□□□ -1.2
SHANK3Q9BYB0 ARL6-204ENST00000463745 4231 ntAPPRIS P1 TSL 2 BASIC7.56□□□□□ -1.2
SHANK3Q9BYB0 RNA5SP339-201ENST00000390987 122 ntBASIC7.56□□□□□ -1.2
SHANK3Q9BYB0 CYP4F29P-201ENST00000420685 446 ntBASIC7.56□□□□□ -1.2
SHANK3Q9BYB0 OR7E116P-201ENST00000448529 957 ntBASIC7.56□□□□□ -1.2
SHANK3Q9BYB0 RPL7P6-201ENST00000480903 738 ntBASIC7.56□□□□□ -1.2
SHANK3Q9BYB0 AC147055.3-201ENST00000510547 851 ntBASIC7.56□□□□□ -1.2
SHANK3Q9BYB0 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC7.56□□□□□ -1.2
SHANK3Q9BYB0 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC7.56□□□□□ -1.2
SHANK3Q9BYB0 AC004890.3-201ENST00000605566 1095 ntBASIC7.56□□□□□ -1.2
SHANK3Q9BYB0 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC7.56□□□□□ -1.2
SHANK3Q9BYB0 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
SHANK3Q9BYB0 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC7.56□□□□□ -1.2
SHANK3Q9BYB0 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
SHANK3Q9BYB0 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC7.56□□□□□ -1.2
SHANK3Q9BYB0 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC7.56□□□□□ -1.2
SHANK3Q9BYB0 LINC02177-201ENST00000564305 5298 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
SHANK3Q9BYB0 LAMB4-202ENST00000388781 5858 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
SHANK3Q9BYB0 AL080317.3-201ENST00000607434 4315 ntBASIC7.56□□□□□ -1.2
SHANK3Q9BYB0 GSTCD-201ENST00000360505 2154 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
SHANK3Q9BYB0 AC015813.3-201ENST00000584805 6113 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
SHANK3Q9BYB0 HSD17B13-201ENST00000302219 2269 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
SHANK3Q9BYB0 GRIN2A-205ENST00000535259 4118 ntTSL 5 BASIC7.56□□□□□ -1.2
SHANK3Q9BYB0 ABCA9-202ENST00000453985 6116 ntTSL 5 BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 U8.4-201ENST00000363626 134 ntBASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 RPS11P7-201ENST00000442125 465 ntBASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 BZW1P1-201ENST00000454901 1240 ntBASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 RPS29P22-201ENST00000472363 168 ntBASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 DCN-210ENST00000547568 823 ntTSL 3 BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 OR1F2P-201ENST00000570470 933 ntBASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 AL121612.2-201ENST00000612261 482 ntBASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 ACSL5-201ENST00000354273 3353 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 SAMD3-204ENST00000439090 2093 ntAPPRIS P1 TSL 2 BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 AL356317.1-201ENST00000396110 1436 ntBASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 PRICKLE2-AS1-201ENST00000482609 6505 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 AL161912.4-201ENST00000623889 2468 ntBASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 MID1-203ENST00000380780 6195 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 ZNF407-207ENST00000582337 5662 ntTSL 5 BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 AC112243.1-201ENST00000623949 3851 ntBASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 CSMD2-205ENST00000373381 13698 ntAPPRIS ALT2 TSL 1 (best) BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 FAM32BP-201ENST00000344033 333 ntBASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 RNU1-106P-201ENST00000384382 164 ntBASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 AC005042.1-201ENST00000393397 800 ntBASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 NENFP1-201ENST00000419476 466 ntBASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 OR52B5P-201ENST00000435337 951 ntBASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 RBM22P1-201ENST00000578589 1214 ntBASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 OR52B5P-202ENST00000641118 1110 ntBASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 PIGN-238ENST00000639758 4239 ntTSL 5 BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 LYRM7-201ENST00000379380 6351 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
SHANK3Q9BYB0 PRLR-208ENST00000509140 1610 ntTSL 5 BASIC7.54□□□□□ -1.2
SHANK3Q9BYB0 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC7.54□□□□□ -1.2
SHANK3Q9BYB0 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
SHANK3Q9BYB0 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
SHANK3Q9BYB0 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
SHANK3Q9BYB0 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
SHANK3Q9BYB0 CSMD1-206ENST00000520002 11740 ntAPPRIS ALT2 TSL 5 BASIC7.54□□□□□ -1.2
SHANK3Q9BYB0 CSMD1-216ENST00000602557 11740 ntAPPRIS ALT2 TSL 5 BASIC7.54□□□□□ -1.2
SHANK3Q9BYB0 GOLGA6L6-201ENST00000619213 4013 ntAPPRIS P1 TSL 5 BASIC7.54□□□□□ -1.2
SHANK3Q9BYB0 ZNF827-203ENST00000508784 7463 ntAPPRIS ALT2 TSL 1 (best) BASIC7.54□□□□□ -1.2
SHANK3Q9BYB0 ZNF385B-201ENST00000336917 2610 ntTSL 5 BASIC7.54□□□□□ -1.2
SHANK3Q9BYB0 MIR133B-201ENST00000362210 119 ntBASIC7.54□□□□□ -1.2
SHANK3Q9BYB0 KAT6B-205ENST00000372725 6944 ntAPPRIS ALT2 TSL 5 BASIC7.54□□□□□ -1.2
SHANK3Q9BYB0 AL645733.1-201ENST00000402250 217 ntBASIC7.54□□□□□ -1.2
SHANK3Q9BYB0 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC7.54□□□□□ -1.2
SHANK3Q9BYB0 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC7.54□□□□□ -1.2
SHANK3Q9BYB0 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC7.54□□□□□ -1.2
SHANK3Q9BYB0 HDAC9-214ENST00000441542 3210 ntAPPRIS P4 TSL 1 (best) BASIC7.54□□□□□ -1.2
SHANK3Q9BYB0 AP000547.1-201ENST00000454360 617 ntBASIC7.54□□□□□ -1.2
SHANK3Q9BYB0 OR2AO1P-201ENST00000476497 403 ntBASIC7.54□□□□□ -1.2
SHANK3Q9BYB0 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
SHANK3Q9BYB0 AC099521.1-201ENST00000482557 334 ntBASIC7.54□□□□□ -1.2
SHANK3Q9BYB0 AC068522.1-201ENST00000482895 345 ntBASIC7.54□□□□□ -1.2
SHANK3Q9BYB0 RPS21P4-201ENST00000487122 248 ntBASIC7.54□□□□□ -1.2
SHANK3Q9BYB0 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC7.54□□□□□ -1.2
SHANK3Q9BYB0 SCARNA6.1-201ENST00000516989 238 ntBASIC7.54□□□□□ -1.2
SHANK3Q9BYB0 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC7.54□□□□□ -1.2
SHANK3Q9BYB0 AC090424.1-201ENST00000535243 736 ntBASIC7.54□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms