Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC5.7□□□□□ -1.5
LIM2P55344 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
LIM2P55344 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
LIM2P55344 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
LIM2P55344 COX6B1P3-201ENST00000312310 260 ntBASIC5.7□□□□□ -1.5
LIM2P55344 TPT1-204ENST00000379060 764 ntTSL 5 BASIC5.7□□□□□ -1.5
LIM2P55344 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
LIM2P55344 AL096800.1-201ENST00000405326 893 ntBASIC5.7□□□□□ -1.5
LIM2P55344 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC5.7□□□□□ -1.5
LIM2P55344 GAS5-202ENST00000414075 413 ntTSL 2 BASIC5.7□□□□□ -1.5
LIM2P55344 AL390879.1-201ENST00000439143 386 ntBASIC5.7□□□□□ -1.5
LIM2P55344 AC083795.1-201ENST00000491760 320 ntBASIC5.7□□□□□ -1.5
LIM2P55344 RPL37P23-201ENST00000492641 294 ntBASIC5.7□□□□□ -1.5
LIM2P55344 RBBP4P1-201ENST00000502424 1276 ntBASIC5.7□□□□□ -1.5
LIM2P55344 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC5.7□□□□□ -1.5
LIM2P55344 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC5.7□□□□□ -1.5
LIM2P55344 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC5.7□□□□□ -1.5
LIM2P55344 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
LIM2P55344 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC5.7□□□□□ -1.5
LIM2P55344 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC5.7□□□□□ -1.5
LIM2P55344 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC5.7□□□□□ -1.5
LIM2P55344 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC5.7□□□□□ -1.5
LIM2P55344 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC5.7□□□□□ -1.5
LIM2P55344 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
LIM2P55344 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
LIM2P55344 AL138960.1-201ENST00000613838 513 ntBASIC5.7□□□□□ -1.5
LIM2P55344 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
LIM2P55344 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
LIM2P55344 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC5.7□□□□□ -1.5
LIM2P55344 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC5.7□□□□□ -1.5
LIM2P55344 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC5.7□□□□□ -1.5
LIM2P55344 TAF12-202ENST00000373824 1334 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
LIM2P55344 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC5.7□□□□□ -1.5
LIM2P55344 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC5.7□□□□□ -1.5
LIM2P55344 AC004690.2-201ENST00000472838 1754 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
LIM2P55344 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC5.69□□□□□ -1.5
LIM2P55344 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC5.69□□□□□ -1.5
LIM2P55344 PSG10P-201ENST00000501199 1500 ntBASIC5.69□□□□□ -1.5
LIM2P55344 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC5.69□□□□□ -1.5
LIM2P55344 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
LIM2P55344 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
LIM2P55344 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC5.69□□□□□ -1.5
LIM2P55344 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
LIM2P55344 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
LIM2P55344 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
LIM2P55344 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
LIM2P55344 SNORA77.2-201ENST00000408571 112 ntBASIC5.69□□□□□ -1.5
LIM2P55344 RPL24P2-201ENST00000421023 475 ntBASIC5.69□□□□□ -1.5
LIM2P55344 NMD3P2-201ENST00000421815 761 ntBASIC5.69□□□□□ -1.5
LIM2P55344 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
LIM2P55344 AL365220.1-201ENST00000432923 399 ntBASIC5.69□□□□□ -1.5
LIM2P55344 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
LIM2P55344 AMYP1-201ENST00000440059 1023 ntBASIC5.69□□□□□ -1.5
LIM2P55344 AL445466.1-201ENST00000448432 357 ntBASIC5.69□□□□□ -1.5
LIM2P55344 AL162739.1-201ENST00000450606 307 ntBASIC5.69□□□□□ -1.5
LIM2P55344 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC5.69□□□□□ -1.5
LIM2P55344 AC068228.1-201ENST00000461723 211 ntBASIC5.69□□□□□ -1.5
LIM2P55344 AC023194.2-201ENST00000465398 406 ntBASIC5.69□□□□□ -1.5
LIM2P55344 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC5.69□□□□□ -1.5
LIM2P55344 LDHAP1-201ENST00000509421 992 ntBASIC5.69□□□□□ -1.5
LIM2P55344 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC5.69□□□□□ -1.5
LIM2P55344 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
LIM2P55344 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC5.69□□□□□ -1.5
LIM2P55344 AC105036.1-201ENST00000566222 271 ntBASIC5.69□□□□□ -1.5
LIM2P55344 AP005119.1-201ENST00000580956 292 ntBASIC5.69□□□□□ -1.5
LIM2P55344 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC5.69□□□□□ -1.5
LIM2P55344 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC5.69□□□□□ -1.5
LIM2P55344 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC5.69□□□□□ -1.5
LIM2P55344 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
LIM2P55344 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC5.69□□□□□ -1.5
LIM2P55344 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC5.69□□□□□ -1.5
LIM2P55344 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC5.69□□□□□ -1.5
LIM2P55344 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC5.69□□□□□ -1.5
LIM2P55344 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC5.69□□□□□ -1.5
LIM2P55344 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
LIM2P55344 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC5.69□□□□□ -1.5
LIM2P55344 STK3-216ENST00000523601 3107 ntTSL 2 BASIC5.69□□□□□ -1.5
LIM2P55344 AC092070.2-203ENST00000598377 3644 ntBASIC5.69□□□□□ -1.5
LIM2P55344 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
LIM2P55344 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
LIM2P55344 GNL2P1-201ENST00000451274 2190 ntBASIC5.69□□□□□ -1.5
LIM2P55344 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC5.69□□□□□ -1.5
LIM2P55344 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
LIM2P55344 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC5.69□□□□□ -1.5
LIM2P55344 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
LIM2P55344 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
LIM2P55344 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC5.68□□□□□ -1.5
LIM2P55344 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
LIM2P55344 RBPJP7-201ENST00000442803 1447 ntBASIC5.68□□□□□ -1.5
LIM2P55344 RBPJP5-201ENST00000449433 1447 ntBASIC5.68□□□□□ -1.5
LIM2P55344 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
LIM2P55344 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
LIM2P55344 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
LIM2P55344 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC5.68□□□□□ -1.5
LIM2P55344 MGST1-205ENST00000396210 914 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
LIM2P55344 AL121977.1-201ENST00000401636 979 ntBASIC5.68□□□□□ -1.5
LIM2P55344 RNU2-18P-201ENST00000411224 162 ntBASIC5.68□□□□□ -1.5
LIM2P55344 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC5.68□□□□□ -1.5
LIM2P55344 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC5.68□□□□□ -1.5
LIM2P55344 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms