Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC8.36□□□□□ -1.07
MSH6P52701 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC8.36□□□□□ -1.07
MSH6P52701 AC093166.4-201ENST00000457867 318 ntBASIC8.36□□□□□ -1.07
MSH6P52701 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC8.36□□□□□ -1.07
MSH6P52701 OR56A7P-201ENST00000524865 941 ntBASIC8.36□□□□□ -1.07
MSH6P52701 RPA2P3-201ENST00000533268 770 ntBASIC8.36□□□□□ -1.07
MSH6P52701 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC8.36□□□□□ -1.07
MSH6P52701 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC8.36□□□□□ -1.07
MSH6P52701 DPPA2P4-201ENST00000563717 878 ntBASIC8.36□□□□□ -1.07
MSH6P52701 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC8.36□□□□□ -1.07
MSH6P52701 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC8.36□□□□□ -1.07
MSH6P52701 AL359513.1-201ENST00000614364 557 ntBASIC8.36□□□□□ -1.07
MSH6P52701 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSH6P52701 AC005840.5-201ENST00000619166 599 ntBASIC8.36□□□□□ -1.07
MSH6P52701 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC8.36□□□□□ -1.07
MSH6P52701 MIR8080-201ENST00000622224 89 ntBASIC8.36□□□□□ -1.07
MSH6P52701 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC8.36□□□□□ -1.07
MSH6P52701 GDF9-202ENST00000378673 2640 ntAPPRIS P1 TSL 5 BASIC8.36□□□□□ -1.07
MSH6P52701 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
MSH6P52701 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
MSH6P52701 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
MSH6P52701 GUCY1B2-204ENST00000531898 1979 ntBASIC8.36□□□□□ -1.07
MSH6P52701 DLG2-201ENST00000280241 7730 ntAPPRIS ALT2 TSL 5 BASIC8.36□□□□□ -1.07
MSH6P52701 AL139805.2-201ENST00000455305 2433 ntBASIC8.36□□□□□ -1.07
MSH6P52701 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC8.36□□□□□ -1.07
MSH6P52701 ZDBF2-201ENST00000374423 10286 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSH6P52701 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSH6P52701 MAPK10-287ENST00000641217 3037 ntBASIC8.36□□□□□ -1.07
MSH6P52701 SCP2-212ENST00000488965 3926 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
MSH6P52701 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSH6P52701 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSH6P52701 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSH6P52701 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
MSH6P52701 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC8.36□□□□□ -1.07
MSH6P52701 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
MSH6P52701 RN7SKP103-201ENST00000363848 320 ntBASIC8.35□□□□□ -1.07
MSH6P52701 RPL35AP24-201ENST00000413846 330 ntBASIC8.35□□□□□ -1.07
MSH6P52701 EEF1A1P29-201ENST00000416082 1096 ntBASIC8.35□□□□□ -1.07
MSH6P52701 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC8.35□□□□□ -1.07
MSH6P52701 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC8.35□□□□□ -1.07
MSH6P52701 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC8.35□□□□□ -1.07
MSH6P52701 AC004039.1-201ENST00000431165 502 ntTSL 5 BASIC8.35□□□□□ -1.07
MSH6P52701 HMGB3P24-201ENST00000433260 622 ntBASIC8.35□□□□□ -1.07
MSH6P52701 AL772161.1-201ENST00000439130 476 ntBASIC8.35□□□□□ -1.07
MSH6P52701 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC8.35□□□□□ -1.07
MSH6P52701 AC100832.1-201ENST00000471945 383 ntBASIC8.35□□□□□ -1.07
MSH6P52701 AC105420.1-201ENST00000504389 582 ntBASIC8.35□□□□□ -1.07
MSH6P52701 AC147055.3-201ENST00000510547 851 ntBASIC8.35□□□□□ -1.07
MSH6P52701 OR51A1P-201ENST00000511110 946 ntBASIC8.35□□□□□ -1.07
MSH6P52701 AC253576.1-201ENST00000511645 1156 ntBASIC8.35□□□□□ -1.07
MSH6P52701 AP000662.1-201ENST00000530952 487 ntBASIC8.35□□□□□ -1.07
MSH6P52701 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC8.35□□□□□ -1.07
MSH6P52701 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC8.35□□□□□ -1.07
MSH6P52701 DCN-209ENST00000546745 1026 ntTSL 3 BASIC8.35□□□□□ -1.07
MSH6P52701 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC8.35□□□□□ -1.07
MSH6P52701 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC8.35□□□□□ -1.07
MSH6P52701 RN7SL708P-201ENST00000580952 299 ntBASIC8.35□□□□□ -1.07
MSH6P52701 AL049539.1-201ENST00000611964 459 ntBASIC8.35□□□□□ -1.07
MSH6P52701 AL121612.2-201ENST00000612261 482 ntBASIC8.35□□□□□ -1.07
MSH6P52701 AC008115.3-201ENST00000614874 549 ntBASIC8.35□□□□□ -1.07
MSH6P52701 AC090510.2-201ENST00000617465 629 ntBASIC8.35□□□□□ -1.07
MSH6P52701 AL137067.2-201ENST00000621202 131 ntBASIC8.35□□□□□ -1.07
MSH6P52701 PARP4P2-201ENST00000446672 3326 ntBASIC8.35□□□□□ -1.07
MSH6P52701 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC8.35□□□□□ -1.07
MSH6P52701 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC8.35□□□□□ -1.07
MSH6P52701 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC8.35□□□□□ -1.07
MSH6P52701 ATF7IP-222ENST00000544627 4847 ntAPPRIS ALT2 TSL 1 (best) BASIC8.35□□□□□ -1.07
MSH6P52701 ZNF91-202ENST00000397082 3572 ntAPPRIS ALT2 TSL 2 BASIC8.35□□□□□ -1.07
MSH6P52701 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
MSH6P52701 ITGA1-201ENST00000282588 10757 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
MSH6P52701 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
MSH6P52701 OR52I1-202ENST00000530443 2961 ntAPPRIS P1 BASIC8.35□□□□□ -1.07
MSH6P52701 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
MSH6P52701 VN1R1-201ENST00000321039 2353 ntAPPRIS P1 BASIC8.35□□□□□ -1.07
MSH6P52701 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
MSH6P52701 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC8.35□□□□□ -1.07
MSH6P52701 AC023421.1-201ENST00000590535 1785 ntBASIC8.35□□□□□ -1.07
MSH6P52701 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC8.35□□□□□ -1.07
MSH6P52701 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
MSH6P52701 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
MSH6P52701 CCNB1IP1P1-201ENST00000428976 839 ntBASIC8.35□□□□□ -1.07
MSH6P52701 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC8.35□□□□□ -1.07
MSH6P52701 RPS17P15-201ENST00000475609 349 ntBASIC8.35□□□□□ -1.07
MSH6P52701 RN7SL583P-201ENST00000475692 287 ntBASIC8.35□□□□□ -1.07
MSH6P52701 AC083795.1-201ENST00000491760 320 ntBASIC8.35□□□□□ -1.07
MSH6P52701 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC8.35□□□□□ -1.07
MSH6P52701 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC8.35□□□□□ -1.07
MSH6P52701 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC8.35□□□□□ -1.07
MSH6P52701 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC8.35□□□□□ -1.07
MSH6P52701 HMGB1P42-201ENST00000532126 553 ntBASIC8.35□□□□□ -1.07
MSH6P52701 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC8.35□□□□□ -1.07
MSH6P52701 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC8.35□□□□□ -1.07
MSH6P52701 AC026992.2-201ENST00000570122 766 ntTSL 5 BASIC8.35□□□□□ -1.07
MSH6P52701 AC104785.1-201ENST00000603220 588 ntBASIC8.35□□□□□ -1.07
MSH6P52701 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC8.35□□□□□ -1.07
MSH6P52701 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC8.35□□□□□ -1.07
MSH6P52701 MIR6810-201ENST00000622701 70 ntBASIC8.35□□□□□ -1.07
MSH6P52701 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC8.35□□□□□ -1.07
MSH6P52701 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
MSH6P52701 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC8.34□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms