Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RPS15AP29-201ENST00000445539 400 ntBASIC7.19□□□□□ -1.26
SMARCA1P28370 KRTAP2-5P-201ENST00000446109 396 ntBASIC7.19□□□□□ -1.26
SMARCA1P28370 AC097463.1-201ENST00000447288 481 ntBASIC7.19□□□□□ -1.26
SMARCA1P28370 OR52I1-201ENST00000450052 1050 ntBASIC7.19□□□□□ -1.26
SMARCA1P28370 AL451063.1-201ENST00000450164 1133 ntBASIC7.19□□□□□ -1.26
SMARCA1P28370 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC7.19□□□□□ -1.26
SMARCA1P28370 OR7E99P-201ENST00000505750 922 ntBASIC7.19□□□□□ -1.26
SMARCA1P28370 AC010230.1-201ENST00000514115 443 ntTSL 3 BASIC7.19□□□□□ -1.26
SMARCA1P28370 MAST4-IT1-201ENST00000514241 658 ntBASIC7.19□□□□□ -1.26
SMARCA1P28370 RNU6-1334P-201ENST00000516032 105 ntBASIC7.19□□□□□ -1.26
SMARCA1P28370 RNU6-943P-201ENST00000516960 98 ntBASIC7.19□□□□□ -1.26
SMARCA1P28370 RNA5SP400-201ENST00000517155 111 ntBASIC7.19□□□□□ -1.26
SMARCA1P28370 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC7.19□□□□□ -1.26
SMARCA1P28370 AC084121.1-201ENST00000533882 835 ntBASIC7.19□□□□□ -1.26
SMARCA1P28370 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC7.19□□□□□ -1.26
SMARCA1P28370 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC7.19□□□□□ -1.26
SMARCA1P28370 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC7.19□□□□□ -1.26
SMARCA1P28370 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
SMARCA1P28370 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC7.19□□□□□ -1.26
SMARCA1P28370 LINC01841-201ENST00000586698 573 ntTSL 4 BASIC7.19□□□□□ -1.26
SMARCA1P28370 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC7.19□□□□□ -1.26
SMARCA1P28370 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC7.19□□□□□ -1.26
SMARCA1P28370 CT45A1-201ENST00000594117 1087 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
SMARCA1P28370 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC7.19□□□□□ -1.26
SMARCA1P28370 TEX41-218ENST00000596540 882 ntTSL 5 BASIC7.19□□□□□ -1.26
SMARCA1P28370 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC7.19□□□□□ -1.26
SMARCA1P28370 AL021368.3-201ENST00000607119 578 ntBASIC7.19□□□□□ -1.26
SMARCA1P28370 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC7.19□□□□□ -1.26
SMARCA1P28370 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC7.19□□□□□ -1.26
SMARCA1P28370 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
SMARCA1P28370 ANGEL2-201ENST00000360506 4323 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
SMARCA1P28370 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC7.19□□□□□ -1.26
SMARCA1P28370 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC7.18□□□□□ -1.26
SMARCA1P28370 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC7.18□□□□□ -1.26
SMARCA1P28370 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
SMARCA1P28370 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC7.18□□□□□ -1.26
SMARCA1P28370 BPIFC-204ENST00000534972 1809 ntTSL 5 BASIC7.18□□□□□ -1.26
SMARCA1P28370 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC7.18□□□□□ -1.26
SMARCA1P28370 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
SMARCA1P28370 RNU1-65P-201ENST00000363919 148 ntBASIC7.18□□□□□ -1.26
SMARCA1P28370 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC7.18□□□□□ -1.26
SMARCA1P28370 RNU6-883P-201ENST00000384597 107 ntBASIC7.18□□□□□ -1.26
SMARCA1P28370 ALDH7A1P4-201ENST00000412255 178 ntBASIC7.18□□□□□ -1.26
SMARCA1P28370 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC7.18□□□□□ -1.26
SMARCA1P28370 MTND4LP21-201ENST00000415303 295 ntBASIC7.18□□□□□ -1.26
SMARCA1P28370 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC7.18□□□□□ -1.26
SMARCA1P28370 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
SMARCA1P28370 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
SMARCA1P28370 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC7.18□□□□□ -1.26
SMARCA1P28370 AC130360.1-201ENST00000425489 1117 ntBASIC7.18□□□□□ -1.26
SMARCA1P28370 FAR1P1-201ENST00000427163 934 ntBASIC7.18□□□□□ -1.26
SMARCA1P28370 AC211433.1-202ENST00000434256 1187 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
SMARCA1P28370 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC7.18□□□□□ -1.26
SMARCA1P28370 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC7.18□□□□□ -1.26
SMARCA1P28370 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC7.18□□□□□ -1.26
SMARCA1P28370 AC103563.5-201ENST00000455643 364 ntBASIC7.18□□□□□ -1.26
SMARCA1P28370 RN7SL221P-201ENST00000466190 281 ntBASIC7.18□□□□□ -1.26
SMARCA1P28370 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
SMARCA1P28370 TRBV8-1-201ENST00000481590 279 ntBASIC7.18□□□□□ -1.26
SMARCA1P28370 AC009879.1-201ENST00000520029 839 ntBASIC7.18□□□□□ -1.26
SMARCA1P28370 AC130365.2-201ENST00000525882 1201 ntBASIC7.18□□□□□ -1.26
SMARCA1P28370 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC7.18□□□□□ -1.26
SMARCA1P28370 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC7.18□□□□□ -1.26
SMARCA1P28370 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC7.18□□□□□ -1.26
SMARCA1P28370 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC7.18□□□□□ -1.26
SMARCA1P28370 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC7.18□□□□□ -1.26
SMARCA1P28370 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC7.18□□□□□ -1.26
SMARCA1P28370 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC7.18□□□□□ -1.26
SMARCA1P28370 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC7.18□□□□□ -1.26
SMARCA1P28370 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC7.18□□□□□ -1.26
SMARCA1P28370 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC7.18□□□□□ -1.26
SMARCA1P28370 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC7.18□□□□□ -1.26
SMARCA1P28370 AC021766.1-201ENST00000624404 741 ntBASIC7.18□□□□□ -1.26
SMARCA1P28370 AP001052.1-201ENST00000626421 99 ntBASIC7.18□□□□□ -1.26
SMARCA1P28370 AC096921.2-201ENST00000561507 1916 ntBASIC7.18□□□□□ -1.26
SMARCA1P28370 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC7.18□□□□□ -1.26
SMARCA1P28370 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC7.18□□□□□ -1.26
SMARCA1P28370 AL353763.1-201ENST00000624467 1628 ntBASIC7.18□□□□□ -1.26
SMARCA1P28370 RASSF8-216ENST00000615708 1328 ntTSL 5 BASIC7.18□□□□□ -1.26
SMARCA1P28370 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC7.18□□□□□ -1.26
SMARCA1P28370 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
SMARCA1P28370 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC7.18□□□□□ -1.26
SMARCA1P28370 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC7.18□□□□□ -1.26
SMARCA1P28370 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC7.18□□□□□ -1.26
SMARCA1P28370 HDAC1P2-201ENST00000453661 1398 ntBASIC7.18□□□□□ -1.26
SMARCA1P28370 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC7.18□□□□□ -1.26
SMARCA1P28370 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
SMARCA1P28370 THAP12P8-201ENST00000447914 2115 ntBASIC7.18□□□□□ -1.26
SMARCA1P28370 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC7.18□□□□□ -1.26
SMARCA1P28370 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
SMARCA1P28370 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
SMARCA1P28370 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC7.17□□□□□ -1.26
SMARCA1P28370 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC7.17□□□□□ -1.26
SMARCA1P28370 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC7.17□□□□□ -1.26
SMARCA1P28370 AC130360.2-201ENST00000533477 1556 ntBASIC7.17□□□□□ -1.26
SMARCA1P28370 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC7.17□□□□□ -1.26
SMARCA1P28370 HSPD1P9-201ENST00000420325 1636 ntBASIC7.17□□□□□ -1.26
SMARCA1P28370 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
SMARCA1P28370 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC7.17□□□□□ -1.26
SMARCA1P28370 SNORA21-201ENST00000362423 132 ntBASIC7.17□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms