Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC7.3□□□□□ -1.24
COL5A3P25940 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC7.3□□□□□ -1.24
COL5A3P25940 AC024589.2-201ENST00000605642 1294 ntBASIC7.3□□□□□ -1.24
COL5A3P25940 MIR6837-201ENST00000620884 64 ntBASIC7.3□□□□□ -1.24
COL5A3P25940 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC7.3□□□□□ -1.24
COL5A3P25940 LINC01197-205ENST00000614853 1774 ntTSL 3 BASIC7.29□□□□□ -1.24
COL5A3P25940 MAVS-201ENST00000416600 11596 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
COL5A3P25940 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC7.29□□□□□ -1.24
COL5A3P25940 ATP10B-202ENST00000327245 7566 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL5A3P25940 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC7.29□□□□□ -1.24
COL5A3P25940 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL5A3P25940 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
COL5A3P25940 PZP-201ENST00000261336 4610 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL5A3P25940 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL5A3P25940 ZNF385B-201ENST00000336917 2610 ntTSL 5 BASIC7.29□□□□□ -1.24
COL5A3P25940 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC7.29□□□□□ -1.24
COL5A3P25940 RPL12P3-201ENST00000440080 396 ntBASIC7.29□□□□□ -1.24
COL5A3P25940 ZNF331-203ENST00000449416 3817 ntAPPRIS P1 TSL 5 BASIC7.29□□□□□ -1.24
COL5A3P25940 AC091685.2-201ENST00000454924 864 ntBASIC7.29□□□□□ -1.24
COL5A3P25940 RPL35AP28-201ENST00000459730 331 ntBASIC7.29□□□□□ -1.24
COL5A3P25940 NMNAT1P5-201ENST00000559657 841 ntBASIC7.29□□□□□ -1.24
COL5A3P25940 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC7.29□□□□□ -1.24
COL5A3P25940 AL512590.3-202ENST00000534123 6463 ntTSL 2 BASIC7.29□□□□□ -1.24
COL5A3P25940 SLC1A2-201ENST00000278379 11696 ntAPPRIS P3 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL5A3P25940 HSPG2-203ENST00000374695 14327 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL5A3P25940 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC7.29□□□□□ -1.24
COL5A3P25940 HSD17B13-201ENST00000302219 2269 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
COL5A3P25940 ANGEL2-201ENST00000360506 4323 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
COL5A3P25940 AL391262.1-201ENST00000556558 1992 ntBASIC7.29□□□□□ -1.24
COL5A3P25940 IARS-213ENST00000627121 4587 ntTSL 5 BASIC7.29□□□□□ -1.24
COL5A3P25940 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL5A3P25940 PTPRT-206ENST00000373198 12746 ntAPPRIS ALT2 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL5A3P25940 C20orf194-201ENST00000252032 6869 ntAPPRIS P1 TSL 5 BASIC7.28□□□□□ -1.24
COL5A3P25940 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
COL5A3P25940 CASP12-212ENST00000613512 1451 ntAPPRIS P5 TSL 1 (best) BASIC7.28□□□□□ -1.24
COL5A3P25940 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
COL5A3P25940 ZNF658B-201ENST00000602828 3408 ntBASIC7.28□□□□□ -1.24
COL5A3P25940 EEF1A1P30-201ENST00000429708 1315 ntBASIC7.28□□□□□ -1.24
COL5A3P25940 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC7.28□□□□□ -1.24
COL5A3P25940 MFSD8-219ENST00000641228 2559 ntBASIC7.28□□□□□ -1.24
COL5A3P25940 FRY-207ENST00000542859 13200 ntAPPRIS P1 TSL 5 BASIC7.28□□□□□ -1.24
COL5A3P25940 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC7.28□□□□□ -1.24
COL5A3P25940 RUNX1T1-250ENST00000614812 7483 ntAPPRIS P3 TSL 5 BASIC7.28□□□□□ -1.24
COL5A3P25940 TTTY15-202ENST00000440408 5284 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
COL5A3P25940 AGL-201ENST00000294724 7446 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
COL5A3P25940 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC7.28□□□□□ -1.24
COL5A3P25940 RN7SKP115-201ENST00000363177 317 ntBASIC7.28□□□□□ -1.24
COL5A3P25940 Y_RNA.625-201ENST00000411256 107 ntBASIC7.28□□□□□ -1.24
COL5A3P25940 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC7.28□□□□□ -1.24
COL5A3P25940 AC105420.1-201ENST00000504389 582 ntBASIC7.28□□□□□ -1.24
COL5A3P25940 EIF4A2P5-201ENST00000529914 499 ntBASIC7.28□□□□□ -1.24
COL5A3P25940 AC126615.2-201ENST00000553003 515 ntBASIC7.28□□□□□ -1.24
COL5A3P25940 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC7.28□□□□□ -1.24
COL5A3P25940 MIR6748-201ENST00000610433 71 ntBASIC7.28□□□□□ -1.24
COL5A3P25940 AL137246.2-201ENST00000613439 662 ntBASIC7.28□□□□□ -1.24
COL5A3P25940 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC7.28□□□□□ -1.24
COL5A3P25940 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC7.28□□□□□ -1.24
COL5A3P25940 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC7.28□□□□□ -1.24
COL5A3P25940 AL034549.2-201ENST00000618285 3373 ntBASIC7.28□□□□□ -1.24
COL5A3P25940 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC7.28□□□□□ -1.24
COL5A3P25940 TMEM75-201ENST00000624314 2165 ntBASIC7.28□□□□□ -1.24
COL5A3P25940 EEF1A1P14-201ENST00000421195 1376 ntBASIC7.28□□□□□ -1.24
COL5A3P25940 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC7.28□□□□□ -1.24
COL5A3P25940 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
COL5A3P25940 EPHA3-201ENST00000336596 5809 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
COL5A3P25940 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC7.28□□□□□ -1.24
COL5A3P25940 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC7.28□□□□□ -1.24
COL5A3P25940 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
COL5A3P25940 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC7.28□□□□□ -1.24
COL5A3P25940 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
COL5A3P25940 NBPF12-202ENST00000579935 5035 ntAPPRIS ALT2 TSL 5 BASIC7.27□□□□□ -1.24
COL5A3P25940 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC7.27□□□□□ -1.24
COL5A3P25940 KAT6A-203ENST00000406337 9241 ntAPPRIS P3 TSL 5 BASIC7.27□□□□□ -1.25
COL5A3P25940 WDCP-202ENST00000406895 3700 ntAPPRIS ALT2 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL5A3P25940 SSX3-202ENST00000376893 800 ntTSL 2 BASIC7.27□□□□□ -1.25
COL5A3P25940 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC7.27□□□□□ -1.25
COL5A3P25940 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC7.27□□□□□ -1.25
COL5A3P25940 AC011742.2-201ENST00000443818 352 ntBASIC7.27□□□□□ -1.25
COL5A3P25940 LDHBP2-201ENST00000456969 1005 ntBASIC7.27□□□□□ -1.25
COL5A3P25940 PGAM1P13-201ENST00000507497 754 ntBASIC7.27□□□□□ -1.25
COL5A3P25940 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC7.27□□□□□ -1.25
COL5A3P25940 AP000676.2-201ENST00000529711 301 ntBASIC7.27□□□□□ -1.25
COL5A3P25940 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC7.27□□□□□ -1.25
COL5A3P25940 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC7.27□□□□□ -1.25
COL5A3P25940 AC020765.1-201ENST00000604296 328 ntBASIC7.27□□□□□ -1.25
COL5A3P25940 AP001784.1-201ENST00000624107 428 ntBASIC7.27□□□□□ -1.25
COL5A3P25940 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC7.27□□□□□ -1.25
COL5A3P25940 MAPK10-365ENST00000641902 3825 ntBASIC7.27□□□□□ -1.25
COL5A3P25940 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC7.27□□□□□ -1.25
COL5A3P25940 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL5A3P25940 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC7.27□□□□□ -1.25
COL5A3P25940 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC7.27□□□□□ -1.25
COL5A3P25940 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL5A3P25940 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL5A3P25940 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC7.27□□□□□ -1.25
COL5A3P25940 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC7.27□□□□□ -1.25
COL5A3P25940 PLEKHG4B-201ENST00000283426 11515 ntAPPRIS P2 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL5A3P25940 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL5A3P25940 MYO5C-201ENST00000261839 6971 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL5A3P25940 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC7.27□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 129.8 ms