Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 NRP1-207ENST00000374875 5407 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
COL6A3P12111 PHACTR4-202ENST00000373839 6190 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL6A3P12111 LAMB4-202ENST00000388781 5858 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL6A3P12111 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC5.9□□□□□ -1.46
COL6A3P12111 PDP2-201ENST00000311765 7146 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL6A3P12111 CUX1-203ENST00000360264 13762 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL6A3P12111 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
COL6A3P12111 AC006065.1-201ENST00000422539 802 ntBASIC5.9□□□□□ -1.47
COL6A3P12111 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC5.9□□□□□ -1.47
COL6A3P12111 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC5.9□□□□□ -1.47
COL6A3P12111 OR6M2P-201ENST00000529831 871 ntBASIC5.9□□□□□ -1.47
COL6A3P12111 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC5.9□□□□□ -1.47
COL6A3P12111 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC5.9□□□□□ -1.47
COL6A3P12111 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC5.9□□□□□ -1.47
COL6A3P12111 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC5.9□□□□□ -1.47
COL6A3P12111 AC073575.2-201ENST00000614212 627 ntBASIC5.9□□□□□ -1.47
COL6A3P12111 DEPDC5-205ENST00000400248 5307 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
COL6A3P12111 ACACB-202ENST00000377848 9247 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL6A3P12111 KMT2A-201ENST00000389506 13655 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL6A3P12111 PDPR-201ENST00000288050 9255 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL6A3P12111 EPHA5-201ENST00000273854 8266 ntAPPRIS P4 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL6A3P12111 AC011933.2-201ENST00000578539 2790 ntBASIC5.9□□□□□ -1.47
COL6A3P12111 AFG1L-201ENST00000368977 5208 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL6A3P12111 MFSD8-220ENST00000641243 1422 ntBASIC5.9□□□□□ -1.47
COL6A3P12111 AC008560.1-201ENST00000510585 1766 ntAPPRIS P5 TSL 2 BASIC5.9□□□□□ -1.47
COL6A3P12111 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL6A3P12111 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.47
COL6A3P12111 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC5.9□□□□□ -1.47
COL6A3P12111 AC005000.1-201ENST00000536192 288 ntBASIC5.9□□□□□ -1.47
COL6A3P12111 AC092490.3-201ENST00000545370 572 ntBASIC5.9□□□□□ -1.47
COL6A3P12111 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC5.9□□□□□ -1.47
COL6A3P12111 DAB1-206ENST00000414851 5168 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
COL6A3P12111 HTR2A-201ENST00000378688 4835 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL6A3P12111 OR2AG2-202ENST00000641124 4224 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
COL6A3P12111 ZNF442-201ENST00000242804 6219 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
COL6A3P12111 AC002384.1-203ENST00000602761 3049 ntTSL 3 BASIC5.89□□□□□ -1.47
COL6A3P12111 LINC01677-204ENST00000635342 1329 ntTSL 5 BASIC5.89□□□□□ -1.47
COL6A3P12111 VTCN1-203ENST00000369458 2612 ntAPPRIS P2 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL6A3P12111 ZNF772-201ENST00000343280 5419 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL6A3P12111 EPB41-204ENST00000356093 5857 ntTSL 5 BASIC5.89□□□□□ -1.47
COL6A3P12111 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL6A3P12111 RNU6-761P-201ENST00000384148 107 ntBASIC5.89□□□□□ -1.47
COL6A3P12111 RN7SKP126-201ENST00000411143 300 ntBASIC5.89□□□□□ -1.47
COL6A3P12111 RN7SKP100-201ENST00000411258 284 ntBASIC5.89□□□□□ -1.47
COL6A3P12111 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC5.89□□□□□ -1.47
COL6A3P12111 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC5.89□□□□□ -1.47
COL6A3P12111 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL6A3P12111 AC112243.1-201ENST00000623949 3851 ntBASIC5.89□□□□□ -1.47
COL6A3P12111 CALML4-203ENST00000395465 4155 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL6A3P12111 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL6A3P12111 AL359551.1-201ENST00000442726 2900 ntTSL 2 BASIC5.89□□□□□ -1.47
COL6A3P12111 PRRC2B-203ENST00000405995 9157 ntTSL 5 BASIC5.89□□□□□ -1.47
COL6A3P12111 AC104964.3-201ENST00000606115 2860 ntBASIC5.89□□□□□ -1.47
COL6A3P12111 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL6A3P12111 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
COL6A3P12111 MADD-202ENST00000342922 6005 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL6A3P12111 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL6A3P12111 AC079741.1-201ENST00000321498 212 ntBASIC5.89□□□□□ -1.47
COL6A3P12111 AL133388.1-201ENST00000404509 287 ntBASIC5.89□□□□□ -1.47
COL6A3P12111 ELOCP19-201ENST00000411919 318 ntBASIC5.89□□□□□ -1.47
COL6A3P12111 AL357752.1-201ENST00000412817 349 ntBASIC5.89□□□□□ -1.47
COL6A3P12111 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC5.89□□□□□ -1.47
COL6A3P12111 RN7SL570P-201ENST00000484405 292 ntBASIC5.89□□□□□ -1.47
COL6A3P12111 AP002812.1-201ENST00000495378 474 ntBASIC5.89□□□□□ -1.47
COL6A3P12111 LINC02218-202ENST00000504998 582 ntTSL 4 BASIC5.89□□□□□ -1.47
COL6A3P12111 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC5.89□□□□□ -1.47
COL6A3P12111 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL6A3P12111 TIAM2-202ENST00000318981 5916 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
COL6A3P12111 PART1-201ENST00000504876 5616 ntTSL 2 BASIC5.89□□□□□ -1.47
COL6A3P12111 USP8-204ENST00000425032 3559 ntTSL 2 BASIC5.89□□□□□ -1.47
COL6A3P12111 TCF12-207ENST00000557843 4076 ntAPPRIS ALT1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL6A3P12111 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
COL6A3P12111 JADE1-214ENST00000611140 5648 ntAPPRIS P3 TSL 5 BASIC5.88□□□□□ -1.47
COL6A3P12111 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC5.88□□□□□ -1.47
COL6A3P12111 NAV2-208ENST00000527559 11171 ntTSL 5 BASIC5.88□□□□□ -1.47
COL6A3P12111 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL6A3P12111 AC009643.1-201ENST00000532030 391 ntBASIC5.88□□□□□ -1.47
COL6A3P12111 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC5.88□□□□□ -1.47
COL6A3P12111 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC5.88□□□□□ -1.47
COL6A3P12111 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC5.88□□□□□ -1.47
COL6A3P12111 MED12-202ENST00000374080 6795 ntAPPRIS P2 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL6A3P12111 GON4L-202ENST00000361040 5118 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL6A3P12111 NCAM1-228ENST00000621128 4698 ntTSL 5 BASIC5.88□□□□□ -1.47
COL6A3P12111 TTC21A-203ENST00000431162 4209 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL6A3P12111 PALM2-AKAP2-201ENST00000302798 4718 ntTSL 2 BASIC5.88□□□□□ -1.47
COL6A3P12111 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL6A3P12111 MYO5C-201ENST00000261839 6971 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL6A3P12111 SLC6A4-201ENST00000261707 6604 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL6A3P12111 CASP12-212ENST00000613512 1451 ntAPPRIS P5 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL6A3P12111 AL359220.1-202ENST00000500036 4499 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL6A3P12111 AL034546.1-201ENST00000623740 3693 ntBASIC5.88□□□□□ -1.47
COL6A3P12111 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC5.88□□□□□ -1.47
COL6A3P12111 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.88□□□□□ -1.47
COL6A3P12111 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC5.88□□□□□ -1.47
COL6A3P12111 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC5.88□□□□□ -1.47
COL6A3P12111 AC078878.1-201ENST00000539832 958 ntBASIC5.88□□□□□ -1.47
COL6A3P12111 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
COL6A3P12111 AC079414.3-201ENST00000612986 1090 ntBASIC5.88□□□□□ -1.47
COL6A3P12111 AC090527.3-201ENST00000619041 548 ntBASIC5.88□□□□□ -1.47
COL6A3P12111 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms