Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC11.52□□□□□ -0.56
SHROOM4Q9ULL8 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC11.52□□□□□ -0.56
SHROOM4Q9ULL8 TSC1-203ENST00000440111 8463 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
SHROOM4Q9ULL8 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC11.52□□□□□ -0.57
SHROOM4Q9ULL8 ZFP42-201ENST00000326866 2651 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
SHROOM4Q9ULL8 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC11.52□□□□□ -0.57
SHROOM4Q9ULL8 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
SHROOM4Q9ULL8 NR1H5P-201ENST00000452683 1377 ntBASIC11.52□□□□□ -0.57
SHROOM4Q9ULL8 VTCN1-202ENST00000359008 2581 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
SHROOM4Q9ULL8 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
SHROOM4Q9ULL8 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC11.52□□□□□ -0.57
SHROOM4Q9ULL8 CLTC-210ENST00000579456 2301 ntTSL 5 BASIC11.51□□□□□ -0.57
SHROOM4Q9ULL8 RNA5SP375-201ENST00000362975 119 ntBASIC11.51□□□□□ -0.57
SHROOM4Q9ULL8 RN7SKP125-201ENST00000410481 302 ntBASIC11.51□□□□□ -0.57
SHROOM4Q9ULL8 RN7SL269P-201ENST00000467795 305 ntBASIC11.51□□□□□ -0.57
SHROOM4Q9ULL8 AC090142.2-201ENST00000483263 416 ntBASIC11.51□□□□□ -0.57
SHROOM4Q9ULL8 BX510359.5-201ENST00000515651 304 ntBASIC11.51□□□□□ -0.57
SHROOM4Q9ULL8 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC11.51□□□□□ -0.57
SHROOM4Q9ULL8 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
SHROOM4Q9ULL8 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC11.51□□□□□ -0.57
SHROOM4Q9ULL8 FO393422.1-201ENST00000603908 708 ntBASIC11.51□□□□□ -0.57
SHROOM4Q9ULL8 AL645933.2-201ENST00000606743 1207 ntBASIC11.51□□□□□ -0.57
SHROOM4Q9ULL8 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
SHROOM4Q9ULL8 ATF7IP-222ENST00000544627 4847 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
SHROOM4Q9ULL8 MID1-202ENST00000380779 6044 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
SHROOM4Q9ULL8 SLC12A6-201ENST00000290209 7286 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
SHROOM4Q9ULL8 NEPNP-201ENST00000404786 1371 ntBASIC11.51□□□□□ -0.57
SHROOM4Q9ULL8 HDAC1P2-201ENST00000453661 1398 ntBASIC11.51□□□□□ -0.57
SHROOM4Q9ULL8 FBXL13-208ENST00000456695 1605 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
SHROOM4Q9ULL8 AP002370.1-201ENST00000528055 1602 ntBASIC11.51□□□□□ -0.57
SHROOM4Q9ULL8 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
SHROOM4Q9ULL8 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
SHROOM4Q9ULL8 OR1M1-202ENST00000641627 2535 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
SHROOM4Q9ULL8 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
SHROOM4Q9ULL8 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
SHROOM4Q9ULL8 RN7SKP115-201ENST00000363177 317 ntBASIC11.51□□□□□ -0.57
SHROOM4Q9ULL8 RN7SKP124-201ENST00000364730 341 ntBASIC11.51□□□□□ -0.57
SHROOM4Q9ULL8 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC11.51□□□□□ -0.57
SHROOM4Q9ULL8 AC007386.1-201ENST00000455212 582 ntBASIC11.51□□□□□ -0.57
SHROOM4Q9ULL8 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC11.51□□□□□ -0.57
SHROOM4Q9ULL8 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
SHROOM4Q9ULL8 GJB6-205ENST00000636852 1840 ntAPPRIS P1 TSL 4 BASIC11.5□□□□□ -0.57
SHROOM4Q9ULL8 SIPA1L1-202ENST00000381232 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC11.5□□□□□ -0.57
SHROOM4Q9ULL8 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
SHROOM4Q9ULL8 ZNF385B-201ENST00000336917 2610 ntTSL 5 BASIC11.5□□□□□ -0.57
SHROOM4Q9ULL8 ATOX1-203ENST00000521264 4341 ntTSL 2 BASIC11.5□□□□□ -0.57
SHROOM4Q9ULL8 CR1-204ENST00000367052 7469 ntTSL 5 BASIC11.5□□□□□ -0.57
SHROOM4Q9ULL8 CR1-205ENST00000367053 7469 ntTSL 5 BASIC11.5□□□□□ -0.57
SHROOM4Q9ULL8 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC11.5□□□□□ -0.57
SHROOM4Q9ULL8 CNOT7P2-201ENST00000441051 832 ntBASIC11.5□□□□□ -0.57
SHROOM4Q9ULL8 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC11.5□□□□□ -0.57
SHROOM4Q9ULL8 AC115223.1-201ENST00000466377 870 ntBASIC11.5□□□□□ -0.57
SHROOM4Q9ULL8 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC11.5□□□□□ -0.57
SHROOM4Q9ULL8 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC11.5□□□□□ -0.57
SHROOM4Q9ULL8 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
SHROOM4Q9ULL8 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC11.5□□□□□ -0.57
SHROOM4Q9ULL8 GMFG-212ENST00000602185 423 ntTSL 3 BASIC11.5□□□□□ -0.57
SHROOM4Q9ULL8 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC11.5□□□□□ -0.57
SHROOM4Q9ULL8 FGFR1OP-202ENST00000366847 14166 ntAPPRIS P4 TSL 1 (best) BASIC11.5□□□□□ -0.57
SHROOM4Q9ULL8 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
SHROOM4Q9ULL8 AL355377.1-201ENST00000621125 1653 ntBASIC11.49□□□□□ -0.57
SHROOM4Q9ULL8 SORBS1-203ENST00000354106 3015 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
SHROOM4Q9ULL8 SORBS2-230ENST00000448662 4356 ntTSL 2 BASIC11.49□□□□□ -0.57
SHROOM4Q9ULL8 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
SHROOM4Q9ULL8 GPN1-203ENST00000424214 1725 ntTSL 2 BASIC11.49□□□□□ -0.57
SHROOM4Q9ULL8 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC11.49□□□□□ -0.57
SHROOM4Q9ULL8 AC112243.1-201ENST00000623949 3851 ntBASIC11.49□□□□□ -0.57
SHROOM4Q9ULL8 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
SHROOM4Q9ULL8 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC11.49□□□□□ -0.57
SHROOM4Q9ULL8 TANK-205ENST00000405852 2155 ntTSL 5 BASIC11.49□□□□□ -0.57
SHROOM4Q9ULL8 WDR95P-201ENST00000425638 1542 ntBASIC11.49□□□□□ -0.57
SHROOM4Q9ULL8 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
SHROOM4Q9ULL8 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
SHROOM4Q9ULL8 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
SHROOM4Q9ULL8 SSR1-201ENST00000244763 9669 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
SHROOM4Q9ULL8 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
SHROOM4Q9ULL8 AC016739.1-201ENST00000405359 345 ntBASIC11.49□□□□□ -0.57
SHROOM4Q9ULL8 MIR1286-201ENST00000408112 78 ntBASIC11.49□□□□□ -0.57
SHROOM4Q9ULL8 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC11.49□□□□□ -0.57
SHROOM4Q9ULL8 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC11.49□□□□□ -0.57
SHROOM4Q9ULL8 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC11.49□□□□□ -0.57
SHROOM4Q9ULL8 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC11.49□□□□□ -0.57
SHROOM4Q9ULL8 AL359195.2-201ENST00000623657 4412 ntBASIC11.49□□□□□ -0.57
SHROOM4Q9ULL8 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
SHROOM4Q9ULL8 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
SHROOM4Q9ULL8 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
SHROOM4Q9ULL8 ZBTB25-204ENST00000608382 10372 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
SHROOM4Q9ULL8 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
SHROOM4Q9ULL8 ZNF91-202ENST00000397082 3572 ntAPPRIS ALT2 TSL 2 BASIC11.48□□□□□ -0.57
SHROOM4Q9ULL8 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
SHROOM4Q9ULL8 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
SHROOM4Q9ULL8 ABL2-201ENST00000344730 6910 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
SHROOM4Q9ULL8 PLEKHA1-204ENST00000392799 3221 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
SHROOM4Q9ULL8 CACNA2D3-212ENST00000620722 3296 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
SHROOM4Q9ULL8 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
SHROOM4Q9ULL8 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC11.48□□□□□ -0.57
SHROOM4Q9ULL8 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC11.48□□□□□ -0.57
SHROOM4Q9ULL8 AL359644.1-204ENST00000440807 440 ntTSL 3 BASIC11.48□□□□□ -0.57
SHROOM4Q9ULL8 MGAT2P1-201ENST00000449718 797 ntBASIC11.48□□□□□ -0.57
SHROOM4Q9ULL8 NDUFA5P12-201ENST00000503796 343 ntBASIC11.48□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 132.8 ms