Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 AL356481.1-202ENST00000426704 970 ntTSL 2 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 PPIAP10-201ENST00000438675 458 ntBASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 ACA64.1-201ENST00000459171 127 ntBASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 RNA5SP271-201ENST00000516700 88 ntBASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 AP002370.2-201ENST00000531424 545 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 OLR1-210ENST00000544577 924 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 AC005736.2-201ENST00000571302 774 ntTSL 2 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 LINC01587-204ENST00000623565 873 ntTSL 2 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 AC008627.1-201ENST00000517511 1704 ntBASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 EEF1A1P24-201ENST00000451469 1378 ntBASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 KCNJ15-220ENST00000612702 3046 ntAPPRIS P1 TSL 4 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 RNA5SP477-201ENST00000362639 119 ntBASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 RNU1-49P-201ENST00000363468 159 ntBASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 SNORA17A-201ENST00000391185 133 ntBASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 RNA5SP156-201ENST00000410250 110 ntBASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 AL158850.1-201ENST00000441249 914 ntTSL 3 BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 MTCO3P17-201ENST00000443775 513 ntBASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 RN7SL101P-201ENST00000496350 279 ntBASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 Y_RNA.710-201ENST00000516975 110 ntBASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 AC022826.1-201ENST00000519383 805 ntBASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 AC068305.2-201ENST00000550567 1205 ntBASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 OTX2-203ENST00000554559 715 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 RPA2P1-201ENST00000556557 721 ntBASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 AC010401.2-202ENST00000570663 396 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 AC011445.2-201ENST00000599274 173 ntBASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 AC027243.2-201ENST00000602530 724 ntBASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 AP000894.4-201ENST00000610185 483 ntBASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 Xist_exon4.1-201ENST00000615964 126 ntBASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 SNORA17.5-201ENST00000630429 132 ntBASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 AC103703.1-201ENST00000634783 663 ntBASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 AC119674.1-213ENST00000641177 1386 ntBASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 NCKAP5-203ENST00000405974 3636 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
CCDC3Q9BQI4 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 USP46-202ENST00000451218 4622 ntTSL 5 BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 AC022905.1-201ENST00000503430 3048 ntBASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 75.7 ms