Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
VPS35Q96QK1 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC6.12□□□□□ -1.43
VPS35Q96QK1 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
VPS35Q96QK1 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC6.12□□□□□ -1.43
VPS35Q96QK1 SNORA21-201ENST00000362423 132 ntBASIC6.12□□□□□ -1.43
VPS35Q96QK1 RNU1-65P-201ENST00000363919 148 ntBASIC6.12□□□□□ -1.43
VPS35Q96QK1 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
VPS35Q96QK1 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC6.12□□□□□ -1.43
VPS35Q96QK1 HMGA1P8-201ENST00000414130 321 ntBASIC6.12□□□□□ -1.43
VPS35Q96QK1 CAP1P2-201ENST00000417455 1409 ntBASIC6.12□□□□□ -1.43
VPS35Q96QK1 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC6.12□□□□□ -1.43
VPS35Q96QK1 PSMD10P2-201ENST00000432890 672 ntBASIC6.12□□□□□ -1.43
VPS35Q96QK1 EIF3EP1-201ENST00000433978 1316 ntBASIC6.12□□□□□ -1.43
VPS35Q96QK1 SHQ1P1-201ENST00000437111 1544 ntBASIC6.12□□□□□ -1.43
VPS35Q96QK1 AL136455.1-201ENST00000441083 1240 ntBASIC6.12□□□□□ -1.43
VPS35Q96QK1 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC6.12□□□□□ -1.43
VPS35Q96QK1 AC097463.1-201ENST00000447288 481 ntBASIC6.12□□□□□ -1.43
VPS35Q96QK1 AC002553.3-201ENST00000453002 341 ntBASIC6.12□□□□□ -1.43
VPS35Q96QK1 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC6.12□□□□□ -1.43
VPS35Q96QK1 RN7SL168P-201ENST00000463821 279 ntBASIC6.12□□□□□ -1.43
VPS35Q96QK1 AC068769.1-201ENST00000474767 2426 ntBASIC6.12□□□□□ -1.43
VPS35Q96QK1 AOX3P-204ENST00000491025 2107 ntBASIC6.12□□□□□ -1.43
VPS35Q96QK1 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC6.12□□□□□ -1.43
VPS35Q96QK1 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
VPS35Q96QK1 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC6.12□□□□□ -1.43
VPS35Q96QK1 AC092865.1-201ENST00000544395 1023 ntBASIC6.12□□□□□ -1.43
VPS35Q96QK1 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
VPS35Q96QK1 AL845552.1-201ENST00000556820 323 ntBASIC6.12□□□□□ -1.43
VPS35Q96QK1 AC145285.4-201ENST00000568183 540 ntTSL 3 BASIC6.12□□□□□ -1.43
VPS35Q96QK1 MRPS21P8-201ENST00000569196 235 ntBASIC6.12□□□□□ -1.43
VPS35Q96QK1 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC6.12□□□□□ -1.43
VPS35Q96QK1 MIR4502-201ENST00000580432 81 ntBASIC6.12□□□□□ -1.43
VPS35Q96QK1 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC6.12□□□□□ -1.43
VPS35Q96QK1 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC6.12□□□□□ -1.43
VPS35Q96QK1 AC016252.1-201ENST00000609721 474 ntBASIC6.12□□□□□ -1.43
VPS35Q96QK1 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC6.12□□□□□ -1.43
VPS35Q96QK1 AC022106.1-201ENST00000612834 766 ntBASIC6.12□□□□□ -1.43
VPS35Q96QK1 FAM27E2-201ENST00000619668 403 ntBASIC6.12□□□□□ -1.43
VPS35Q96QK1 AL137067.2-201ENST00000621202 131 ntBASIC6.12□□□□□ -1.43
VPS35Q96QK1 AC011504.1-201ENST00000623331 4103 ntBASIC6.12□□□□□ -1.43
VPS35Q96QK1 AC069542.2-201ENST00000624816 216 ntBASIC6.12□□□□□ -1.43
VPS35Q96QK1 PSMD10P2-203ENST00000627340 914 ntTSL 5 BASIC6.12□□□□□ -1.43
VPS35Q96QK1 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC6.12□□□□□ -1.43
VPS35Q96QK1 AC116667.2-201ENST00000641075 823 ntBASIC6.12□□□□□ -1.43
VPS35Q96QK1 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
VPS35Q96QK1 AC079753.1-201ENST00000623243 3868 ntBASIC6.12□□□□□ -1.43
VPS35Q96QK1 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC6.12□□□□□ -1.43
VPS35Q96QK1 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
VPS35Q96QK1 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
VPS35Q96QK1 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC6.11□□□□□ -1.43
VPS35Q96QK1 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC6.11□□□□□ -1.43
VPS35Q96QK1 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC6.11□□□□□ -1.43
VPS35Q96QK1 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
VPS35Q96QK1 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
VPS35Q96QK1 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC6.11□□□□□ -1.43
VPS35Q96QK1 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC6.11□□□□□ -1.43
VPS35Q96QK1 POT1-202ENST00000393329 3950 ntTSL 5 BASIC6.11□□□□□ -1.43
VPS35Q96QK1 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
VPS35Q96QK1 ECHDC1-202ENST00000368289 909 ntTSL 5 BASIC6.11□□□□□ -1.43
VPS35Q96QK1 GCNT1P4-201ENST00000404096 329 ntBASIC6.11□□□□□ -1.43
VPS35Q96QK1 RNA5SP156-201ENST00000410250 110 ntBASIC6.11□□□□□ -1.43
VPS35Q96QK1 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC6.11□□□□□ -1.43
VPS35Q96QK1 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC6.11□□□□□ -1.43
VPS35Q96QK1 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC6.11□□□□□ -1.43
VPS35Q96QK1 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC6.11□□□□□ -1.43
VPS35Q96QK1 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
VPS35Q96QK1 APOBEC3AP1-201ENST00000511396 287 ntBASIC6.11□□□□□ -1.43
VPS35Q96QK1 AC021733.2-201ENST00000518830 497 ntBASIC6.11□□□□□ -1.43
VPS35Q96QK1 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC6.11□□□□□ -1.43
VPS35Q96QK1 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC6.11□□□□□ -1.43
VPS35Q96QK1 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC6.11□□□□□ -1.43
VPS35Q96QK1 MIR4271-201ENST00000582451 67 ntBASIC6.11□□□□□ -1.43
VPS35Q96QK1 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC6.11□□□□□ -1.43
VPS35Q96QK1 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC6.11□□□□□ -1.43
VPS35Q96QK1 CT45A1-201ENST00000594117 1087 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
VPS35Q96QK1 AC011468.3-201ENST00000597886 332 ntTSL 3 BASIC6.11□□□□□ -1.43
VPS35Q96QK1 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC6.11□□□□□ -1.43
VPS35Q96QK1 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC6.11□□□□□ -1.43
VPS35Q96QK1 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC6.11□□□□□ -1.43
VPS35Q96QK1 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
VPS35Q96QK1 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
VPS35Q96QK1 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
VPS35Q96QK1 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
VPS35Q96QK1 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
VPS35Q96QK1 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC6.1□□□□□ -1.43
VPS35Q96QK1 AL353763.1-201ENST00000624467 1628 ntBASIC6.1□□□□□ -1.43
VPS35Q96QK1 TCF12-205ENST00000537840 1598 ntTSL 2 BASIC6.1□□□□□ -1.43
VPS35Q96QK1 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC6.1□□□□□ -1.43
VPS35Q96QK1 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
VPS35Q96QK1 DNM1P47-203ENST00000571780 12667 ntBASIC6.1□□□□□ -1.43
VPS35Q96QK1 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
VPS35Q96QK1 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
VPS35Q96QK1 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
VPS35Q96QK1 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC6.1□□□□□ -1.43
VPS35Q96QK1 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC6.1□□□□□ -1.43
VPS35Q96QK1 RASSF8-216ENST00000615708 1328 ntTSL 5 BASIC6.1□□□□□ -1.43
VPS35Q96QK1 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
VPS35Q96QK1 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
VPS35Q96QK1 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
VPS35Q96QK1 RNA5SP110-201ENST00000362638 115 ntBASIC6.1□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms