Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ERLIN2-201ENST00000276461 6073 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL4A4P53420 CACNB2-215ENST00000615785 3707 ntTSL 5 BASIC6.34□□□□□ -1.39
COL4A4P53420 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL4A4P53420 LMO7-207ENST00000465261 5580 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
COL4A4P53420 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL4A4P53420 OLFM4-201ENST00000219022 2897 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
COL4A4P53420 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
COL4A4P53420 SPTLC3-201ENST00000399002 6169 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
COL4A4P53420 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC6.34□□□□□ -1.4
COL4A4P53420 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC6.34□□□□□ -1.4
COL4A4P53420 YIPF4-201ENST00000238831 11949 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
COL4A4P53420 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC6.33□□□□□ -1.4
COL4A4P53420 NDUFA4-201ENST00000339600 2130 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL4A4P53420 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
COL4A4P53420 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL4A4P53420 GAPDHP24-201ENST00000328713 983 ntBASIC6.33□□□□□ -1.4
COL4A4P53420 AC116036.1-201ENST00000412199 367 ntBASIC6.33□□□□□ -1.4
COL4A4P53420 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC6.33□□□□□ -1.4
COL4A4P53420 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC6.33□□□□□ -1.4
COL4A4P53420 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC6.33□□□□□ -1.4
COL4A4P53420 AL445928.1-201ENST00000435545 222 ntBASIC6.33□□□□□ -1.4
COL4A4P53420 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC6.33□□□□□ -1.4
COL4A4P53420 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC6.33□□□□□ -1.4
COL4A4P53420 RN7SL172P-201ENST00000460535 303 ntBASIC6.33□□□□□ -1.4
COL4A4P53420 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC6.33□□□□□ -1.4
COL4A4P53420 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC6.33□□□□□ -1.4
COL4A4P53420 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC6.33□□□□□ -1.4
COL4A4P53420 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC6.33□□□□□ -1.4
COL4A4P53420 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC6.33□□□□□ -1.4
COL4A4P53420 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC6.33□□□□□ -1.4
COL4A4P53420 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC6.33□□□□□ -1.4
COL4A4P53420 OR5D13-201ENST00000623930 945 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
COL4A4P53420 KIF1B-211ENST00000620295 8624 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
COL4A4P53420 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
COL4A4P53420 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
COL4A4P53420 STAMBP-201ENST00000339566 6277 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
COL4A4P53420 ITK-201ENST00000422843 4528 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL4A4P53420 ARPP21-203ENST00000396482 2416 ntTSL 2 BASIC6.33□□□□□ -1.4
COL4A4P53420 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
COL4A4P53420 ILDR2-201ENST00000271417 13140 ntAPPRIS P2 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL4A4P53420 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL4A4P53420 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC6.33□□□□□ -1.4
COL4A4P53420 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC6.33□□□□□ -1.4
COL4A4P53420 AL359976.1-201ENST00000418655 3528 ntBASIC6.33□□□□□ -1.4
COL4A4P53420 KLF7-202ENST00000412414 7954 ntTSL 2 BASIC6.33□□□□□ -1.4
COL4A4P53420 MED12-202ENST00000374080 6795 ntAPPRIS P2 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL4A4P53420 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL4A4P53420 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
COL4A4P53420 FARP1-219ENST00000596580 13532 ntTSL 5 BASIC6.33□□□□□ -1.4
COL4A4P53420 AC103591.2-201ENST00000265259 766 ntBASIC6.33□□□□□ -1.4
COL4A4P53420 RN7SKP128-201ENST00000364270 303 ntBASIC6.33□□□□□ -1.4
COL4A4P53420 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC6.33□□□□□ -1.4
COL4A4P53420 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL4A4P53420 MRM2-202ENST00000407040 582 ntTSL 3 BASIC6.33□□□□□ -1.4
COL4A4P53420 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC6.33□□□□□ -1.4
COL4A4P53420 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC6.33□□□□□ -1.4
COL4A4P53420 AL606490.1-201ENST00000452266 765 ntBASIC6.33□□□□□ -1.4
COL4A4P53420 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC6.33□□□□□ -1.4
COL4A4P53420 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC6.33□□□□□ -1.4
COL4A4P53420 AC100832.1-201ENST00000471945 383 ntBASIC6.33□□□□□ -1.4
COL4A4P53420 FTH1P8-201ENST00000498161 514 ntBASIC6.33□□□□□ -1.4
COL4A4P53420 AL049779.3-201ENST00000557141 606 ntBASIC6.33□□□□□ -1.4
COL4A4P53420 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
COL4A4P53420 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC6.33□□□□□ -1.4
COL4A4P53420 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC6.33□□□□□ -1.4
COL4A4P53420 MIR4436B2-201ENST00000581415 91 ntBASIC6.33□□□□□ -1.4
COL4A4P53420 MIR4436B1-201ENST00000583272 91 ntBASIC6.33□□□□□ -1.4
COL4A4P53420 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
COL4A4P53420 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC6.33□□□□□ -1.4
COL4A4P53420 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL4A4P53420 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL4A4P53420 CASC19-248ENST00000641674 1356 ntBASIC6.32□□□□□ -1.4
COL4A4P53420 CR1-206ENST00000400960 6959 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL4A4P53420 PCDH19-203ENST00000420881 7936 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL4A4P53420 ALB-209ENST00000503124 1741 ntTSL 5 BASIC6.32□□□□□ -1.4
COL4A4P53420 DLG1-202ENST00000357674 4931 ntAPPRIS ALT1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL4A4P53420 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL4A4P53420 ZC3H11B-202ENST00000636126 4432 ntAPPRIS ALT1 TSL 2 BASIC6.32□□□□□ -1.4
COL4A4P53420 AL031595.3-201ENST00000624919 14262 ntBASIC6.32□□□□□ -1.4
COL4A4P53420 SSBP2-201ENST00000320672 8780 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL4A4P53420 NBPF26-204ENST00000615145 2656 ntTSL 5 BASIC6.32□□□□□ -1.4
COL4A4P53420 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL4A4P53420 ERLIN2-211ENST00000523887 2347 ntTSL 2 BASIC6.32□□□□□ -1.4
COL4A4P53420 PIGN-238ENST00000639758 4239 ntTSL 5 BASIC6.32□□□□□ -1.4
COL4A4P53420 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL4A4P53420 TRIM2-201ENST00000338700 6735 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL4A4P53420 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC6.32□□□□□ -1.4
COL4A4P53420 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC6.32□□□□□ -1.4
COL4A4P53420 AL022331.1-201ENST00000429025 477 ntBASIC6.32□□□□□ -1.4
COL4A4P53420 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC6.32□□□□□ -1.4
COL4A4P53420 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL4A4P53420 OR2AO1P-201ENST00000476497 403 ntBASIC6.32□□□□□ -1.4
COL4A4P53420 RPL17P2-201ENST00000491913 451 ntBASIC6.32□□□□□ -1.4
COL4A4P53420 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC6.32□□□□□ -1.4
COL4A4P53420 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC6.32□□□□□ -1.4
COL4A4P53420 CDH12P4-201ENST00000517835 295 ntBASIC6.32□□□□□ -1.4
COL4A4P53420 CDH12P3-201ENST00000517935 295 ntBASIC6.32□□□□□ -1.4
COL4A4P53420 CDH12P1-201ENST00000518435 295 ntBASIC6.32□□□□□ -1.4
COL4A4P53420 HIGD1AP5-201ENST00000529959 259 ntBASIC6.32□□□□□ -1.4
COL4A4P53420 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC6.32□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms