Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC8.39□□□□□ -1.07
MSH6P52701 RNA5SP228-201ENST00000516232 133 ntBASIC8.39□□□□□ -1.07
MSH6P52701 METTL15-211ENST00000634762 718 ntTSL 5 BASIC8.39□□□□□ -1.07
MSH6P52701 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
MSH6P52701 KAT6A-201ENST00000265713 9153 ntAPPRIS P3 TSL 1 (best) BASIC8.39□□□□□ -1.07
MSH6P52701 AL512634.1-201ENST00000566873 2432 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
MSH6P52701 ABLIM1-214ENST00000533213 7606 ntTSL 5 BASIC8.39□□□□□ -1.07
MSH6P52701 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC8.39□□□□□ -1.07
MSH6P52701 KLF7-201ENST00000309446 8362 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
MSH6P52701 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
MSH6P52701 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC8.39□□□□□ -1.07
MSH6P52701 ZBTB34-202ENST00000373452 6528 ntAPPRIS P1 BASIC8.39□□□□□ -1.07
MSH6P52701 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC8.39□□□□□ -1.07
MSH6P52701 AC104162.1-201ENST00000430831 2382 ntBASIC8.39□□□□□ -1.07
MSH6P52701 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC8.39□□□□□ -1.07
MSH6P52701 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC8.39□□□□□ -1.07
MSH6P52701 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
MSH6P52701 ADTRP-203ENST00000414691 2058 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
MSH6P52701 SLC35E3-202ENST00000398004 17791 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
MSH6P52701 MYO1B-203ENST00000392316 4764 ntTSL 5 BASIC8.39□□□□□ -1.07
MSH6P52701 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC8.39□□□□□ -1.07
MSH6P52701 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC8.39□□□□□ -1.07
MSH6P52701 AL136531.3-201ENST00000624378 3658 ntBASIC8.38□□□□□ -1.07
MSH6P52701 TLR7-201ENST00000380659 5011 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
MSH6P52701 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC8.38□□□□□ -1.07
MSH6P52701 OR11H13P-201ENST00000359695 979 ntBASIC8.38□□□□□ -1.07
MSH6P52701 RN7SKP77-201ENST00000363261 353 ntBASIC8.38□□□□□ -1.07
MSH6P52701 RNU1-24P-201ENST00000364285 165 ntBASIC8.38□□□□□ -1.07
MSH6P52701 FABP12P1-201ENST00000401911 322 ntBASIC8.38□□□□□ -1.07
MSH6P52701 SNRPEP6-201ENST00000407465 277 ntBASIC8.38□□□□□ -1.07
MSH6P52701 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC8.38□□□□□ -1.07
MSH6P52701 RN7SL172P-201ENST00000460535 303 ntBASIC8.38□□□□□ -1.07
MSH6P52701 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC8.38□□□□□ -1.07
MSH6P52701 AC024558.1-201ENST00000505008 528 ntBASIC8.38□□□□□ -1.07
MSH6P52701 SUMO2P7-201ENST00000511179 285 ntBASIC8.38□□□□□ -1.07
MSH6P52701 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC8.38□□□□□ -1.07
MSH6P52701 CDC42P3-201ENST00000518493 633 ntBASIC8.38□□□□□ -1.07
MSH6P52701 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC8.38□□□□□ -1.07
MSH6P52701 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC8.38□□□□□ -1.07
MSH6P52701 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC8.38□□□□□ -1.07
MSH6P52701 AC027229.1-201ENST00000583887 253 ntBASIC8.38□□□□□ -1.07
MSH6P52701 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC8.38□□□□□ -1.07
MSH6P52701 ATM-229ENST00000639953 587 ntTSL 5 BASIC8.38□□□□□ -1.07
MSH6P52701 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
MSH6P52701 AC079777.1-201ENST00000623836 1953 ntBASIC8.38□□□□□ -1.07
MSH6P52701 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC8.38□□□□□ -1.07
MSH6P52701 SORBS1-219ENST00000607232 4374 ntAPPRIS ALT2 TSL 5 BASIC8.38□□□□□ -1.07
MSH6P52701 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC8.38□□□□□ -1.07
MSH6P52701 SELE-203ENST00000367775 3389 ntTSL 5 BASIC8.38□□□□□ -1.07
MSH6P52701 MDM4-205ENST00000391947 10008 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
MSH6P52701 CACNA2D3-212ENST00000620722 3296 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
MSH6P52701 KCNA2-208ENST00000638616 3279 ntAPPRIS P1 TSL 5 BASIC8.38□□□□□ -1.07
MSH6P52701 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
MSH6P52701 AC009120.2-204ENST00000621548 2032 ntBASIC8.38□□□□□ -1.07
MSH6P52701 ZNF385B-201ENST00000336917 2610 ntTSL 5 BASIC8.38□□□□□ -1.07
MSH6P52701 GPNMB-201ENST00000258733 2862 ntAPPRIS P3 TSL 1 (best) BASIC8.38□□□□□ -1.07
MSH6P52701 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
MSH6P52701 SENP1-201ENST00000448372 4679 ntAPPRIS P2 TSL 1 (best) BASIC8.38□□□□□ -1.07
MSH6P52701 AL391262.1-201ENST00000556558 1992 ntBASIC8.37□□□□□ -1.07
MSH6P52701 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
MSH6P52701 SUPT20H-224ENST00000542180 2478 ntAPPRIS ALT2 TSL 5 BASIC8.37□□□□□ -1.07
MSH6P52701 ITPR1-205ENST00000456211 9717 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
MSH6P52701 SNORA56-201ENST00000383966 129 ntBASIC8.37□□□□□ -1.07
MSH6P52701 MIR223-201ENST00000385204 110 ntBASIC8.37□□□□□ -1.07
MSH6P52701 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC8.37□□□□□ -1.07
MSH6P52701 RBMY2KP-201ENST00000418221 992 ntBASIC8.37□□□□□ -1.07
MSH6P52701 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC8.37□□□□□ -1.07
MSH6P52701 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC8.37□□□□□ -1.07
MSH6P52701 CBX1P2-201ENST00000453841 458 ntBASIC8.37□□□□□ -1.07
MSH6P52701 RPL35AP19-201ENST00000469425 329 ntBASIC8.37□□□□□ -1.07
MSH6P52701 AL355032.1-201ENST00000472981 438 ntBASIC8.37□□□□□ -1.07
MSH6P52701 AC022215.1-201ENST00000481770 362 ntBASIC8.37□□□□□ -1.07
MSH6P52701 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC8.37□□□□□ -1.07
MSH6P52701 OR5D15P-201ENST00000531671 942 ntBASIC8.37□□□□□ -1.07
MSH6P52701 FAM186A-203ENST00000543096 2116 ntAPPRIS ALT2 TSL 2 BASIC8.37□□□□□ -1.07
MSH6P52701 AC141002.1-201ENST00000607025 279 ntBASIC8.37□□□□□ -1.07
MSH6P52701 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC8.37□□□□□ -1.07
MSH6P52701 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
MSH6P52701 MIR6837-201ENST00000620884 64 ntBASIC8.37□□□□□ -1.07
MSH6P52701 AL034408.1-201ENST00000637712 664 ntBASIC8.37□□□□□ -1.07
MSH6P52701 LAMA2-205ENST00000617695 9678 ntAPPRIS ALT2 TSL 5 BASIC8.37□□□□□ -1.07
MSH6P52701 LAMA2-206ENST00000618192 9687 ntAPPRIS ALT2 TSL 5 BASIC8.37□□□□□ -1.07
MSH6P52701 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC8.37□□□□□ -1.07
MSH6P52701 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC8.37□□□□□ -1.07
MSH6P52701 LINC02044-201ENST00000490139 2502 ntTSL 2 BASIC8.37□□□□□ -1.07
MSH6P52701 RSAD2-201ENST00000382040 3519 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
MSH6P52701 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC8.37□□□□□ -1.07
MSH6P52701 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC8.37□□□□□ -1.07
MSH6P52701 LMO7-203ENST00000357063 8237 ntAPPRIS ALT2 TSL 5 BASIC8.37□□□□□ -1.07
MSH6P52701 ERLIN2-211ENST00000523887 2347 ntTSL 2 BASIC8.37□□□□□ -1.07
MSH6P52701 CAST-202ENST00000325674 3356 ntTSL 5 BASIC8.37□□□□□ -1.07
MSH6P52701 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC8.37□□□□□ -1.07
MSH6P52701 STARD4-AS1-201ENST00000500779 5525 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
MSH6P52701 AC024587.1-201ENST00000505925 2157 ntBASIC8.37□□□□□ -1.07
MSH6P52701 ADAMTS9-201ENST00000295903 7060 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
MSH6P52701 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSH6P52701 AL442071.1-201ENST00000289890 558 ntTSL 3 BASIC8.36□□□□□ -1.07
MSH6P52701 RNU105B-201ENST00000364478 208 ntBASIC8.36□□□□□ -1.07
MSH6P52701 AL050335.1-201ENST00000396909 869 ntBASIC8.36□□□□□ -1.07
MSH6P52701 RN7SKP273-201ENST00000411392 314 ntBASIC8.36□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms