Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 MIR6806-201ENST00000622141 64 ntBASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 AC012254.5-201ENST00000623573 478 ntBASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 TTC39DP-201ENST00000416781 1688 ntBASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
CHMP4AQ9BY43 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 AC003045.1-201ENST00000398779 713 ntBASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 LSM5-203ENST00000409782 649 ntTSL 5 BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 DHFRP2-201ENST00000414224 547 ntBASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 DSTNP5-201ENST00000427921 523 ntBASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 AL450003.1-201ENST00000439447 455 ntTSL 2 BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 MORF4-201ENST00000447135 971 ntBASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 COX4I1P2-201ENST00000447446 547 ntBASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 SEPT14P1-201ENST00000458703 648 ntBASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 AC026826.3-201ENST00000561747 158 ntBASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 AC022872.1-201ENST00000568391 781 ntTSL 2 BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 AL078601.3-201ENST00000573303 535 ntBASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 OR7M1P-201ENST00000608946 533 ntBASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 AC099654.6-201ENST00000636487 512 ntBASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 LINC02341-202ENST00000637462 1295 ntTSL 5 BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 BORCS7-ASMT-201ENST00000299353 2670 ntAPPRIS P1 TSL 5 BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 AC125336.1-201ENST00000508893 2827 ntBASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 USP37-203ENST00000415516 4516 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC8.19□□□□□ -1.1
CHMP4AQ9BY43 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 OR52N5-201ENST00000317093 1034 ntAPPRIS P1 BASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 VNN3-205ENST00000417437 1117 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 FABP5P2-201ENST00000439042 408 ntBASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 RPSAP40-201ENST00000442343 891 ntBASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 RN7SL254P-201ENST00000460609 284 ntBASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 RN7SL369P-201ENST00000477138 299 ntBASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 RN7SL741P-201ENST00000482473 289 ntBASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 AC117525.1-201ENST00000515228 503 ntBASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 NOX4-213ENST00000531342 696 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 AP000654.1-201ENST00000602510 1192 ntTSL 5 BASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 uc_338.31-201ENST00000615595 186 ntBASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 AL590410.1-201ENST00000617925 333 ntBASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 LINC01435-220ENST00000630847 714 ntTSL 5 BASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 AC008957.3-201ENST00000624112 2242 ntBASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC8.18□□□□□ -1.1
CHMP4AQ9BY43 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 AL731556.1-201ENST00000394628 3711 ntBASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC8.17□□□□□ -1.1
CHMP4AQ9BY43 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC8.17□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 137 ms