Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
SYNE1Q8NF91 IGF1-206ENST00000456098 7370 ntTSL 5 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 CSNK1A1-204ENST00000504676 1772 ntTSL 2 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 CYP3A5-201ENST00000222982 1720 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 Z97989.1-201ENST00000531702 2421 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 MIR23A-201ENST00000385245 73 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 COPS8P2-201ENST00000473228 627 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 AC009120.1-201ENST00000493458 473 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 NDUFB5P1-201ENST00000508134 564 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 AP005119.1-201ENST00000580956 292 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 OVAAL-201ENST00000442621 1489 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 EGFEM1P-205ENST00000483846 2327 ntTSL 5 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 IGSF6-201ENST00000268389 2785 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 MID1-201ENST00000317552 6463 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 AL050335.1-201ENST00000396909 869 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 LINC01762-201ENST00000423907 454 ntTSL 5 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 FABP7P2-201ENST00000429946 379 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 CST12P-201ENST00000457644 362 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 AC087360.1-201ENST00000518788 616 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 BICD1-206ENST00000551086 423 ntTSL 3 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 AC010480.1-201ENST00000624823 684 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 MFSD8-219ENST00000641228 2559 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 FGD4-202ENST00000427716 8242 ntAPPRIS P1 TSL 2 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 MAPK10-344ENST00000641718 3746 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 WBP11P1-201ENST00000562560 1931 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 TAF1-203ENST00000373790 7629 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 SHQ1P1-201ENST00000437111 1544 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 TMSB4XP4-201ENST00000323496 618 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 AL513325.1-201ENST00000417716 1034 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 GSTA6P-201ENST00000424144 582 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 OTX2-AS1-201ENST00000534909 2428 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 PGK2-201ENST00000304801 1657 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 AL022323.4-201ENST00000623980 13120 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 CIR1P2-201ENST00000514821 1342 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 ZNF969P-201ENST00000510345 2341 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 OR52N5-201ENST00000317093 1034 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 BX323845.3-201ENST00000428215 527 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 AC231760.1-201ENST00000498002 260 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 IGHV4-55-201ENST00000520889 368 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 AL157899.1-201ENST00000604110 936 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 AL008723.3-201ENST00000608926 449 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 SORBS1-202ENST00000306402 5858 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 CLCA3P-203ENST00000490028 2781 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 TRMT10A-202ENST00000394876 1638 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 AKAP17BP-201ENST00000431706 2719 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 METTL21EP-202ENST00000605100 2312 ntTSL 2 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 MAPK10-287ENST00000641217 3037 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 OSBPL6-207ENST00000409631 3273 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 CCR9-204ENST00000422395 1331 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 AC005831.1-201ENST00000624384 1697 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC1.88□□□□□ -2.11
SYNE1Q8NF91 RN7SKP162-201ENST00000363605 345 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 MIR1203-201ENST00000408812 85 ntBASIC1.88□□□□□ -2.11
SYNE1Q8NF91 NDUFS5P5-201ENST00000437256 321 ntBASIC1.88□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 133.7 ms