Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC6.73□□□□□ -1.33
USP39Q53GS9 FDFT1-208ENST00000525777 1472 ntTSL 2 BASIC6.73□□□□□ -1.33
USP39Q53GS9 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC6.73□□□□□ -1.33
USP39Q53GS9 CDY2A-201ENST00000250838 1954 ntAPPRIS ALT1 BASIC6.73□□□□□ -1.33
USP39Q53GS9 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
USP39Q53GS9 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
USP39Q53GS9 KCNJ15-220ENST00000612702 3046 ntAPPRIS P1 TSL 4 BASIC6.73□□□□□ -1.33
USP39Q53GS9 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
USP39Q53GS9 CA1-222ENST00000523953 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
USP39Q53GS9 ERVW-1-202ENST00000603053 2763 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
USP39Q53GS9 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC6.73□□□□□ -1.33
USP39Q53GS9 OAT-201ENST00000368845 2048 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
USP39Q53GS9 IAPP-205ENST00000542023 2015 ntTSL 2 BASIC6.73□□□□□ -1.33
USP39Q53GS9 SRGAP3-213ENST00000618999 3929 ntTSL 5 BASIC6.73□□□□□ -1.33
USP39Q53GS9 ATAD1-202ENST00000328142 2939 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
USP39Q53GS9 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC6.73□□□□□ -1.33
USP39Q53GS9 CHRM5-202ENST00000557872 2687 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
USP39Q53GS9 LACRT-201ENST00000257867 551 ntAPPRIS P2 TSL 1 (best) BASIC6.73□□□□□ -1.33
USP39Q53GS9 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
USP39Q53GS9 IFNK-201ENST00000276943 1140 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
USP39Q53GS9 OR4K17-201ENST00000315543 1032 ntBASIC6.73□□□□□ -1.33
USP39Q53GS9 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
USP39Q53GS9 TRIM55-203ENST00000350034 1177 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
USP39Q53GS9 RNA5SP77-201ENST00000365394 120 ntBASIC6.73□□□□□ -1.33
USP39Q53GS9 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
USP39Q53GS9 EEF1AKMT1-201ENST00000382754 875 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
USP39Q53GS9 YWHAZP6-201ENST00000399764 738 ntBASIC6.73□□□□□ -1.33
USP39Q53GS9 RN7SKP271-201ENST00000410528 320 ntBASIC6.73□□□□□ -1.33
USP39Q53GS9 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
USP39Q53GS9 AL663061.1-201ENST00000416625 580 ntBASIC6.73□□□□□ -1.33
USP39Q53GS9 AL359962.1-201ENST00000417969 303 ntTSL 5 BASIC6.73□□□□□ -1.33
USP39Q53GS9 AC108479.1-201ENST00000431142 427 ntBASIC6.73□□□□□ -1.33
USP39Q53GS9 AC007679.3-201ENST00000434035 414 ntBASIC6.73□□□□□ -1.33
USP39Q53GS9 MIR4432HG-201ENST00000441598 470 ntTSL 3 BASIC6.73□□□□□ -1.33
USP39Q53GS9 AL035420.1-202ENST00000450129 357 ntTSL 3 BASIC6.73□□□□□ -1.33
USP39Q53GS9 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC6.73□□□□□ -1.33
USP39Q53GS9 TPTE2P5-203ENST00000458118 728 ntBASIC6.73□□□□□ -1.33
USP39Q53GS9 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC6.73□□□□□ -1.33
USP39Q53GS9 AC110716.1-201ENST00000506934 607 ntTSL 2 BASIC6.73□□□□□ -1.33
USP39Q53GS9 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC6.73□□□□□ -1.33
USP39Q53GS9 CCNHP1-201ENST00000513311 678 ntBASIC6.73□□□□□ -1.33
USP39Q53GS9 AC097501.1-202ENST00000514707 313 ntTSL 3 BASIC6.73□□□□□ -1.33
USP39Q53GS9 AC016813.1-201ENST00000521511 735 ntTSL 3 BASIC6.73□□□□□ -1.33
USP39Q53GS9 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC6.73□□□□□ -1.33
USP39Q53GS9 OR9L1P-201ENST00000529493 933 ntBASIC6.73□□□□□ -1.33
USP39Q53GS9 TNFSF11-205ENST00000544862 818 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
USP39Q53GS9 AC125612.1-201ENST00000547580 377 ntBASIC6.73□□□□□ -1.33
USP39Q53GS9 AL161757.4-202ENST00000557467 737 ntTSL 3 BASIC6.73□□□□□ -1.33
USP39Q53GS9 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC6.73□□□□□ -1.33
USP39Q53GS9 NIFKP6-201ENST00000598115 845 ntBASIC6.73□□□□□ -1.33
USP39Q53GS9 PLEKHA3P1-201ENST00000598554 894 ntBASIC6.73□□□□□ -1.33
USP39Q53GS9 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
USP39Q53GS9 Xist_exon4.1-201ENST00000615964 126 ntBASIC6.73□□□□□ -1.33
USP39Q53GS9 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC6.73□□□□□ -1.33
USP39Q53GS9 EDRF1-AS1-214ENST00000622798 526 ntTSL 5 BASIC6.73□□□□□ -1.33
USP39Q53GS9 OFCC1-218ENST00000622909 754 ntAPPRIS ALT2 TSL 5 BASIC6.73□□□□□ -1.33
USP39Q53GS9 SNORA16A-202ENST00000628458 135 ntBASIC6.73□□□□□ -1.33
USP39Q53GS9 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
USP39Q53GS9 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC6.73□□□□□ -1.33
USP39Q53GS9 BABAM2-201ENST00000342045 1681 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
USP39Q53GS9 BABAM2-203ENST00000361704 1686 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
USP39Q53GS9 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC6.73□□□□□ -1.33
USP39Q53GS9 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC6.73□□□□□ -1.33
USP39Q53GS9 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC6.73□□□□□ -1.33
USP39Q53GS9 AC241584.2-201ENST00000637142 2090 ntBASIC6.73□□□□□ -1.33
USP39Q53GS9 FBXL17-203ENST00000496714 3773 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
USP39Q53GS9 MIPEPP2-201ENST00000422560 1819 ntBASIC6.73□□□□□ -1.33
USP39Q53GS9 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC6.73□□□□□ -1.33
USP39Q53GS9 MDGA2-203ENST00000426342 2871 ntAPPRIS P2 TSL 5 BASIC6.73□□□□□ -1.33
USP39Q53GS9 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC6.73□□□□□ -1.33
USP39Q53GS9 EPHA3-203ENST00000494014 3085 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
USP39Q53GS9 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC6.72□□□□□ -1.33
USP39Q53GS9 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
USP39Q53GS9 ALS2CR12-207ENST00000439709 1626 ntAPPRIS ALT2 TSL 2 BASIC6.72□□□□□ -1.33
USP39Q53GS9 GPR1-209ENST00000612892 2565 ntAPPRIS P1 TSL 4 BASIC6.72□□□□□ -1.33
USP39Q53GS9 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC6.72□□□□□ -1.33
USP39Q53GS9 NCALD-201ENST00000220931 3283 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
USP39Q53GS9 AP002001.1-202ENST00000525797 1754 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
USP39Q53GS9 GABRB2-209ENST00000612710 2470 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
USP39Q53GS9 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC6.72□□□□□ -1.33
USP39Q53GS9 API5P1-201ENST00000424316 1510 ntBASIC6.72□□□□□ -1.33
USP39Q53GS9 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC6.72□□□□□ -1.33
USP39Q53GS9 LINC01505-203ENST00000435485 1686 ntTSL 5 BASIC6.72□□□□□ -1.33
USP39Q53GS9 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
USP39Q53GS9 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
USP39Q53GS9 DAPL1-201ENST00000309950 552 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
USP39Q53GS9 OR4F17-201ENST00000318050 1054 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
USP39Q53GS9 TAS2R42-201ENST00000334266 945 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
USP39Q53GS9 ARGFX-201ENST00000334384 992 ntAPPRIS P1 TSL 3 BASIC6.72□□□□□ -1.33
USP39Q53GS9 RN7SKP77-201ENST00000363261 353 ntBASIC6.72□□□□□ -1.33
USP39Q53GS9 SNORA38B-201ENST00000363524 131 ntBASIC6.72□□□□□ -1.33
USP39Q53GS9 FIG4-202ENST00000368941 791 ntTSL 3 BASIC6.72□□□□□ -1.33
USP39Q53GS9 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
USP39Q53GS9 MTCO2P31-201ENST00000402702 684 ntBASIC6.72□□□□□ -1.33
USP39Q53GS9 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
USP39Q53GS9 DAPL1-203ENST00000409042 544 ntTSL 4 BASIC6.72□□□□□ -1.33
USP39Q53GS9 RPS21P8-201ENST00000413365 247 ntBASIC6.72□□□□□ -1.33
USP39Q53GS9 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC6.72□□□□□ -1.33
USP39Q53GS9 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
USP39Q53GS9 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms