Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 EEF1B2P5-201ENST00000444820 548 ntBASIC7.34□□□□□ -1.23
COL5A3P25940 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC7.34□□□□□ -1.23
COL5A3P25940 SPIRE1-206ENST00000453447 2107 ntTSL 5 BASIC7.34□□□□□ -1.23
COL5A3P25940 RN7SL610P-201ENST00000463845 291 ntBASIC7.34□□□□□ -1.23
COL5A3P25940 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
COL5A3P25940 RPL23AP40-201ENST00000487630 390 ntBASIC7.34□□□□□ -1.23
COL5A3P25940 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC7.34□□□□□ -1.23
COL5A3P25940 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC7.34□□□□□ -1.23
COL5A3P25940 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC7.34□□□□□ -1.23
COL5A3P25940 AC090424.1-201ENST00000535243 736 ntBASIC7.34□□□□□ -1.23
COL5A3P25940 RBM22P12-201ENST00000567098 1255 ntBASIC7.34□□□□□ -1.23
COL5A3P25940 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC7.34□□□□□ -1.23
COL5A3P25940 MIR4311-201ENST00000580794 100 ntBASIC7.34□□□□□ -1.23
COL5A3P25940 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC7.34□□□□□ -1.23
COL5A3P25940 AC008655.2-201ENST00000597049 304 ntTSL 4 BASIC7.34□□□□□ -1.23
COL5A3P25940 SCYL3-202ENST00000367771 6364 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
COL5A3P25940 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC7.34□□□□□ -1.23
COL5A3P25940 GLRA3-201ENST00000274093 8770 ntAPPRIS P3 TSL 1 (best) BASIC7.34□□□□□ -1.24
COL5A3P25940 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC7.34□□□□□ -1.24
COL5A3P25940 CD86-204ENST00000469710 1604 ntTSL 2 BASIC7.34□□□□□ -1.24
COL5A3P25940 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC7.34□□□□□ -1.24
COL5A3P25940 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC7.34□□□□□ -1.24
COL5A3P25940 SPHKAP-202ENST00000392056 6917 ntAPPRIS ALT2 TSL 1 (best) BASIC7.34□□□□□ -1.24
COL5A3P25940 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL5A3P25940 AP000866.6-201ENST00000638898 3579 ntBASIC7.33□□□□□ -1.24
COL5A3P25940 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC7.33□□□□□ -1.24
COL5A3P25940 MRM2-202ENST00000407040 582 ntTSL 3 BASIC7.33□□□□□ -1.24
COL5A3P25940 HMGA1P8-201ENST00000414130 321 ntBASIC7.33□□□□□ -1.24
COL5A3P25940 AC108075.1-201ENST00000424692 529 ntBASIC7.33□□□□□ -1.24
COL5A3P25940 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC7.33□□□□□ -1.24
COL5A3P25940 AC079922.1-201ENST00000443291 359 ntBASIC7.33□□□□□ -1.24
COL5A3P25940 AP000547.1-201ENST00000454360 617 ntBASIC7.33□□□□□ -1.24
COL5A3P25940 AC110775.1-201ENST00000513721 462 ntBASIC7.33□□□□□ -1.24
COL5A3P25940 OR5D15P-201ENST00000531671 942 ntBASIC7.33□□□□□ -1.24
COL5A3P25940 ASB8-202ENST00000535055 657 ntTSL 2 BASIC7.33□□□□□ -1.24
COL5A3P25940 MIR4260-201ENST00000583107 67 ntBASIC7.33□□□□□ -1.24
COL5A3P25940 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
COL5A3P25940 ALMS1-204ENST00000484298 12595 ntAPPRIS ALT2 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL5A3P25940 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL5A3P25940 NLGN4Y-203ENST00000382868 5338 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
COL5A3P25940 AC008147.2-201ENST00000552061 4713 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
COL5A3P25940 MR1-204ENST00000367580 7704 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL5A3P25940 MGAT5-201ENST00000281923 8144 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL5A3P25940 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL5A3P25940 ZNF160-208ENST00000599056 4229 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL5A3P25940 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
COL5A3P25940 ACSL5-201ENST00000354273 3353 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL5A3P25940 TCF12-207ENST00000557843 4076 ntAPPRIS ALT1 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL5A3P25940 RUNDC3A-AS1-202ENST00000588097 5203 ntTSL 5 BASIC7.33□□□□□ -1.24
COL5A3P25940 GPN1-203ENST00000424214 1725 ntTSL 2 BASIC7.33□□□□□ -1.24
COL5A3P25940 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC7.33□□□□□ -1.24
COL5A3P25940 ABHD2-201ENST00000352732 8735 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL5A3P25940 THAP12P9-201ENST00000503971 2360 ntBASIC7.32□□□□□ -1.24
COL5A3P25940 AC130304.1-201ENST00000622942 2385 ntBASIC7.32□□□□□ -1.24
COL5A3P25940 MIR133B-201ENST00000362210 119 ntBASIC7.32□□□□□ -1.24
COL5A3P25940 RN7SKP28-201ENST00000364770 305 ntBASIC7.32□□□□□ -1.24
COL5A3P25940 RNU1-106P-201ENST00000384382 164 ntBASIC7.32□□□□□ -1.24
COL5A3P25940 RNU6ATAC18P-201ENST00000408413 101 ntBASIC7.32□□□□□ -1.24
COL5A3P25940 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC7.32□□□□□ -1.24
COL5A3P25940 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC7.32□□□□□ -1.24
COL5A3P25940 FABP7P2-201ENST00000429946 379 ntBASIC7.32□□□□□ -1.24
COL5A3P25940 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC7.32□□□□□ -1.24
COL5A3P25940 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC7.32□□□□□ -1.24
COL5A3P25940 LINC02218-201ENST00000503267 529 ntTSL 2 BASIC7.32□□□□□ -1.24
COL5A3P25940 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC7.32□□□□□ -1.24
COL5A3P25940 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC7.32□□□□□ -1.24
COL5A3P25940 AC108449.2-201ENST00000560865 552 ntTSL 3 BASIC7.32□□□□□ -1.24
COL5A3P25940 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC7.32□□□□□ -1.24
COL5A3P25940 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC7.32□□□□□ -1.24
COL5A3P25940 RBM22P1-201ENST00000578589 1214 ntBASIC7.32□□□□□ -1.24
COL5A3P25940 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC7.32□□□□□ -1.24
COL5A3P25940 AC011497.2-201ENST00000600255 639 ntBASIC7.32□□□□□ -1.24
COL5A3P25940 MFN1-205ENST00000471841 5224 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL5A3P25940 RUNX1T1-248ENST00000613302 7687 ntAPPRIS P3 TSL 5 BASIC7.32□□□□□ -1.24
COL5A3P25940 ZC3H11B-202ENST00000636126 4432 ntAPPRIS ALT1 TSL 2 BASIC7.32□□□□□ -1.24
COL5A3P25940 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC7.32□□□□□ -1.24
COL5A3P25940 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL5A3P25940 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC7.32□□□□□ -1.24
COL5A3P25940 COL6A4P1-202ENST00000487147 4317 ntBASIC7.32□□□□□ -1.24
COL5A3P25940 FAM199X-202ENST00000493442 7457 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL5A3P25940 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL5A3P25940 MEGF10-203ENST00000503335 7571 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL5A3P25940 AC007938.2-201ENST00000604666 2634 ntBASIC7.32□□□□□ -1.24
COL5A3P25940 ZNF549-204ENST00000602149 5505 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
COL5A3P25940 AC005821.1-203ENST00000577270 3145 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
COL5A3P25940 CLASP1-215ENST00000541377 7909 ntTSL 5 BASIC7.32□□□□□ -1.24
COL5A3P25940 AC005042.1-201ENST00000393397 800 ntBASIC7.32□□□□□ -1.24
COL5A3P25940 AL109941.1-201ENST00000401925 229 ntBASIC7.32□□□□□ -1.24
COL5A3P25940 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC7.32□□□□□ -1.24
COL5A3P25940 OR6D1P-201ENST00000436165 939 ntBASIC7.32□□□□□ -1.24
COL5A3P25940 AC092106.1-201ENST00000444291 373 ntBASIC7.32□□□□□ -1.24
COL5A3P25940 AC026254.2-201ENST00000475295 371 ntBASIC7.32□□□□□ -1.24
COL5A3P25940 RPSAP50-201ENST00000481955 852 ntBASIC7.32□□□□□ -1.24
COL5A3P25940 RN7SL570P-201ENST00000484405 292 ntBASIC7.32□□□□□ -1.24
COL5A3P25940 NDUFB5P1-201ENST00000508134 564 ntBASIC7.32□□□□□ -1.24
COL5A3P25940 AC126177.5-201ENST00000549599 178 ntBASIC7.32□□□□□ -1.24
COL5A3P25940 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC7.32□□□□□ -1.24
COL5A3P25940 RN7SL708P-201ENST00000580952 299 ntBASIC7.32□□□□□ -1.24
COL5A3P25940 MIR132-201ENST00000591554 101 ntBASIC7.32□□□□□ -1.24
COL5A3P25940 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC7.32□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms