Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 CASC19-274ENST00000642018 970 ntBASIC6.15□□□□□ -1.42
MSH3P20585 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC6.15□□□□□ -1.42
MSH3P20585 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
MSH3P20585 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.43
MSH3P20585 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC6.15□□□□□ -1.43
MSH3P20585 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC6.15□□□□□ -1.43
MSH3P20585 AC092724.1-201ENST00000624623 3397 ntBASIC6.15□□□□□ -1.43
MSH3P20585 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC6.15□□□□□ -1.43
MSH3P20585 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC6.15□□□□□ -1.43
MSH3P20585 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC6.15□□□□□ -1.43
MSH3P20585 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC6.14□□□□□ -1.43
MSH3P20585 AOX3P-204ENST00000491025 2107 ntBASIC6.14□□□□□ -1.43
MSH3P20585 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
MSH3P20585 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC6.14□□□□□ -1.43
MSH3P20585 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
MSH3P20585 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
MSH3P20585 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
MSH3P20585 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
MSH3P20585 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
MSH3P20585 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
MSH3P20585 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
MSH3P20585 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC6.14□□□□□ -1.43
MSH3P20585 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC6.14□□□□□ -1.43
MSH3P20585 RN7SKP77-201ENST00000363261 353 ntBASIC6.14□□□□□ -1.43
MSH3P20585 OR2W4P-201ENST00000406496 926 ntBASIC6.14□□□□□ -1.43
MSH3P20585 AC007562.1-201ENST00000421819 517 ntBASIC6.14□□□□□ -1.43
MSH3P20585 RFESDP1-201ENST00000422350 461 ntBASIC6.14□□□□□ -1.43
MSH3P20585 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC6.14□□□□□ -1.43
MSH3P20585 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC6.14□□□□□ -1.43
MSH3P20585 AC023274.2-201ENST00000445264 521 ntBASIC6.14□□□□□ -1.43
MSH3P20585 AC010240.2-201ENST00000445363 1205 ntBASIC6.14□□□□□ -1.43
MSH3P20585 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC6.14□□□□□ -1.43
MSH3P20585 AC093166.3-201ENST00000448785 303 ntBASIC6.14□□□□□ -1.43
MSH3P20585 HMGB1P7-201ENST00000450921 612 ntBASIC6.14□□□□□ -1.43
MSH3P20585 AC118758.1-202ENST00000454719 225 ntBASIC6.14□□□□□ -1.43
MSH3P20585 RN7SL649P-201ENST00000496974 275 ntBASIC6.14□□□□□ -1.43
MSH3P20585 LDHAP1-201ENST00000509421 992 ntBASIC6.14□□□□□ -1.43
MSH3P20585 AC090958.1-201ENST00000511122 351 ntBASIC6.14□□□□□ -1.43
MSH3P20585 RNU6-751P-201ENST00000516382 101 ntBASIC6.14□□□□□ -1.43
MSH3P20585 AC027117.1-201ENST00000520646 667 ntTSL 5 BASIC6.14□□□□□ -1.43
MSH3P20585 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC6.14□□□□□ -1.43
MSH3P20585 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC6.14□□□□□ -1.43
MSH3P20585 AC078864.1-201ENST00000547538 512 ntTSL 4 BASIC6.14□□□□□ -1.43
MSH3P20585 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC6.14□□□□□ -1.43
MSH3P20585 COPZ1-218ENST00000553231 551 ntTSL 5 BASIC6.14□□□□□ -1.43
MSH3P20585 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC6.14□□□□□ -1.43
MSH3P20585 AC090651.1-201ENST00000567865 634 ntBASIC6.14□□□□□ -1.43
MSH3P20585 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC6.14□□□□□ -1.43
MSH3P20585 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC6.14□□□□□ -1.43
MSH3P20585 AP005136.2-201ENST00000583253 1049 ntBASIC6.14□□□□□ -1.43
MSH3P20585 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
MSH3P20585 NPIPB1P-202ENST00000588786 828 ntBASIC6.14□□□□□ -1.43
MSH3P20585 AP000654.1-201ENST00000602510 1192 ntTSL 5 BASIC6.14□□□□□ -1.43
MSH3P20585 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC6.14□□□□□ -1.43
MSH3P20585 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
MSH3P20585 AL157762.1-201ENST00000619612 415 ntBASIC6.14□□□□□ -1.43
MSH3P20585 MIR6806-201ENST00000622141 64 ntBASIC6.14□□□□□ -1.43
MSH3P20585 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC6.14□□□□□ -1.43
MSH3P20585 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC6.14□□□□□ -1.43
MSH3P20585 AL357140.4-201ENST00000636827 412 ntBASIC6.14□□□□□ -1.43
MSH3P20585 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC6.14□□□□□ -1.43
MSH3P20585 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
MSH3P20585 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC6.14□□□□□ -1.43
MSH3P20585 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
MSH3P20585 CSTF3-201ENST00000323959 2797 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
MSH3P20585 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
MSH3P20585 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
MSH3P20585 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC6.14□□□□□ -1.43
MSH3P20585 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
MSH3P20585 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
MSH3P20585 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
MSH3P20585 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
MSH3P20585 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
MSH3P20585 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC6.13□□□□□ -1.43
MSH3P20585 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
MSH3P20585 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
MSH3P20585 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC6.13□□□□□ -1.43
MSH3P20585 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC6.13□□□□□ -1.43
MSH3P20585 RNA5SP514-201ENST00000363717 111 ntBASIC6.13□□□□□ -1.43
MSH3P20585 AL035422.1-201ENST00000414193 397 ntBASIC6.13□□□□□ -1.43
MSH3P20585 RPS7P8-201ENST00000418311 581 ntBASIC6.13□□□□□ -1.43
MSH3P20585 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC6.13□□□□□ -1.43
MSH3P20585 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC6.13□□□□□ -1.43
MSH3P20585 AL354893.1-201ENST00000433735 348 ntBASIC6.13□□□□□ -1.43
MSH3P20585 GAPDHP23-201ENST00000444823 993 ntBASIC6.13□□□□□ -1.43
MSH3P20585 AL590004.3-202ENST00000445883 451 ntBASIC6.13□□□□□ -1.43
MSH3P20585 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC6.13□□□□□ -1.43
MSH3P20585 PPIA-203ENST00000451562 544 ntTSL 2 BASIC6.13□□□□□ -1.43
MSH3P20585 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC6.13□□□□□ -1.43
MSH3P20585 AC019084.1-201ENST00000457337 432 ntBASIC6.13□□□□□ -1.43
MSH3P20585 AL022319.1-201ENST00000458183 1167 ntBASIC6.13□□□□□ -1.43
MSH3P20585 AC021006.1-201ENST00000489849 553 ntBASIC6.13□□□□□ -1.43
MSH3P20585 AC104078.2-201ENST00000504344 541 ntTSL 5 BASIC6.13□□□□□ -1.43
MSH3P20585 AC122718.2-201ENST00000505325 591 ntBASIC6.13□□□□□ -1.43
MSH3P20585 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC6.13□□□□□ -1.43
MSH3P20585 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC6.13□□□□□ -1.43
MSH3P20585 APOBEC3AP1-201ENST00000511396 287 ntBASIC6.13□□□□□ -1.43
MSH3P20585 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC6.13□□□□□ -1.43
MSH3P20585 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC6.13□□□□□ -1.43
MSH3P20585 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC6.13□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms