Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC011411.1-201ENST00000509592 876 ntBASIC5.73□□□□□ -1.49
HOXD4P09016 AC026782.2-201ENST00000510845 636 ntBASIC5.73□□□□□ -1.49
HOXD4P09016 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC5.73□□□□□ -1.49
HOXD4P09016 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.73□□□□□ -1.49
HOXD4P09016 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC5.73□□□□□ -1.49
HOXD4P09016 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC5.73□□□□□ -1.49
HOXD4P09016 AC067773.1-201ENST00000603284 1094 ntBASIC5.73□□□□□ -1.49
HOXD4P09016 AC108865.2-201ENST00000606881 432 ntBASIC5.73□□□□□ -1.49
HOXD4P09016 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC5.73□□□□□ -1.49
HOXD4P09016 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXD4P09016 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXD4P09016 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC5.73□□□□□ -1.49
HOXD4P09016 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXD4P09016 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC5.73□□□□□ -1.49
HOXD4P09016 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HOXD4P09016 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXD4P09016 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
HOXD4P09016 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXD4P09016 NEK2P4-201ENST00000425793 1329 ntBASIC5.73□□□□□ -1.49
HOXD4P09016 AL512310.3-201ENST00000547023 1335 ntBASIC5.73□□□□□ -1.49
HOXD4P09016 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXD4P09016 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
HOXD4P09016 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC5.72□□□□□ -1.49
HOXD4P09016 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC5.72□□□□□ -1.49
HOXD4P09016 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
HOXD4P09016 AC005332.9-201ENST00000620266 2921 ntBASIC5.72□□□□□ -1.49
HOXD4P09016 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
HOXD4P09016 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
HOXD4P09016 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
HOXD4P09016 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
HOXD4P09016 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC5.72□□□□□ -1.49
HOXD4P09016 COX6B1P3-201ENST00000312310 260 ntBASIC5.72□□□□□ -1.49
HOXD4P09016 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
HOXD4P09016 FIGN-202ENST00000409634 746 ntTSL 5 BASIC5.72□□□□□ -1.49
HOXD4P09016 RPS26P38-201ENST00000414476 348 ntBASIC5.72□□□□□ -1.49
HOXD4P09016 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.72□□□□□ -1.49
HOXD4P09016 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC5.72□□□□□ -1.49
HOXD4P09016 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
HOXD4P09016 AC094019.1-201ENST00000434678 472 ntBASIC5.72□□□□□ -1.49
HOXD4P09016 SOCS5P1-201ENST00000440415 949 ntBASIC5.72□□□□□ -1.49
HOXD4P09016 CXCR2P1-202ENST00000443392 1074 ntBASIC5.72□□□□□ -1.49
HOXD4P09016 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC5.72□□□□□ -1.49
HOXD4P09016 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
HOXD4P09016 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC5.72□□□□□ -1.49
HOXD4P09016 AC108751.3-201ENST00000461814 1020 ntBASIC5.72□□□□□ -1.49
HOXD4P09016 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
HOXD4P09016 RN7SL326P-201ENST00000477493 296 ntBASIC5.72□□□□□ -1.49
HOXD4P09016 FAM107B-217ENST00000478076 790 ntAPPRIS P1 TSL 4 BASIC5.72□□□□□ -1.49
HOXD4P09016 RPL7P51-201ENST00000490532 749 ntBASIC5.72□□□□□ -1.49
HOXD4P09016 AC095052.1-201ENST00000509955 863 ntBASIC5.72□□□□□ -1.49
HOXD4P09016 AC010343.2-201ENST00000510162 224 ntBASIC5.72□□□□□ -1.49
HOXD4P09016 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC5.72□□□□□ -1.49
HOXD4P09016 NATP-201ENST00000523491 878 ntBASIC5.72□□□□□ -1.49
HOXD4P09016 AC036111.2-201ENST00000533247 901 ntBASIC5.72□□□□□ -1.49
HOXD4P09016 MED21-206ENST00000546323 575 ntTSL 3 BASIC5.72□□□□□ -1.49
HOXD4P09016 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC5.72□□□□□ -1.49
HOXD4P09016 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC5.72□□□□□ -1.49
HOXD4P09016 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC5.72□□□□□ -1.49
HOXD4P09016 AC090826.1-203ENST00000569235 490 ntBASIC5.72□□□□□ -1.49
HOXD4P09016 AC040977.1-201ENST00000573222 343 ntTSL 3 BASIC5.72□□□□□ -1.49
HOXD4P09016 AC090616.1-201ENST00000583895 447 ntBASIC5.72□□□□□ -1.49
HOXD4P09016 AC104836.2-201ENST00000609675 1293 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
HOXD4P09016 AL137246.2-201ENST00000613439 662 ntBASIC5.72□□□□□ -1.49
HOXD4P09016 AL096712.1-201ENST00000614561 159 ntBASIC5.72□□□□□ -1.49
HOXD4P09016 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC5.72□□□□□ -1.49
HOXD4P09016 AC012653.2-201ENST00000621880 420 ntBASIC5.72□□□□□ -1.49
HOXD4P09016 MIR4302-201ENST00000638058 60 ntBASIC5.72□□□□□ -1.49
HOXD4P09016 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC5.72□□□□□ -1.49
HOXD4P09016 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC5.72□□□□□ -1.49
HOXD4P09016 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC5.72□□□□□ -1.49
HOXD4P09016 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
HOXD4P09016 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC5.72□□□□□ -1.49
HOXD4P09016 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
HOXD4P09016 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
HOXD4P09016 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
HOXD4P09016 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
HOXD4P09016 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC5.71□□□□□ -1.49
HOXD4P09016 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.71□□□□□ -1.49
HOXD4P09016 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
HOXD4P09016 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
HOXD4P09016 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.71□□□□□ -1.5
HOXD4P09016 EEF1A1P9-201ENST00000514975 1383 ntBASIC5.71□□□□□ -1.5
HOXD4P09016 ZNF426-202ENST00000535489 2375 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
HOXD4P09016 AC010624.4-201ENST00000597606 1351 ntBASIC5.71□□□□□ -1.5
HOXD4P09016 SAGE3P-201ENST00000619800 1635 ntBASIC5.71□□□□□ -1.5
HOXD4P09016 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
HOXD4P09016 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
HOXD4P09016 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
HOXD4P09016 AP000473.2-201ENST00000602659 1537 ntBASIC5.71□□□□□ -1.5
HOXD4P09016 ZMYM6-202ENST00000357182 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
HOXD4P09016 MT4-201ENST00000219162 294 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
HOXD4P09016 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
HOXD4P09016 RNU1-59P-201ENST00000364829 162 ntBASIC5.71□□□□□ -1.5
HOXD4P09016 AL050335.1-201ENST00000396909 869 ntBASIC5.71□□□□□ -1.5
HOXD4P09016 AL023284.3-201ENST00000407767 334 ntBASIC5.71□□□□□ -1.5
HOXD4P09016 AL035696.2-201ENST00000407941 709 ntBASIC5.71□□□□□ -1.5
HOXD4P09016 SNORA11B-201ENST00000408175 129 ntBASIC5.71□□□□□ -1.5
HOXD4P09016 RN7SKP144-201ENST00000411108 279 ntBASIC5.71□□□□□ -1.5
HOXD4P09016 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC5.71□□□□□ -1.5
HOXD4P09016 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms