Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 TNPO1P1-201ENST00000423641 1138 ntBASIC9.07□□□□□ -0.96
SCAPERQ9BY12 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC9.07□□□□□ -0.96
SCAPERQ9BY12 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC9.07□□□□□ -0.96
SCAPERQ9BY12 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC9.07□□□□□ -0.96
SCAPERQ9BY12 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC9.07□□□□□ -0.96
SCAPERQ9BY12 MGAT2P1-201ENST00000449718 797 ntBASIC9.07□□□□□ -0.96
SCAPERQ9BY12 BZW1P1-201ENST00000454901 1240 ntBASIC9.07□□□□□ -0.96
SCAPERQ9BY12 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC9.07□□□□□ -0.96
SCAPERQ9BY12 AC008629.2-201ENST00000503783 483 ntBASIC9.07□□□□□ -0.96
SCAPERQ9BY12 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC9.07□□□□□ -0.96
SCAPERQ9BY12 SUMO2P7-201ENST00000511179 285 ntBASIC9.07□□□□□ -0.96
SCAPERQ9BY12 AC092593.2-201ENST00000513866 913 ntBASIC9.07□□□□□ -0.96
SCAPERQ9BY12 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC9.07□□□□□ -0.96
SCAPERQ9BY12 OR56A7P-201ENST00000524865 941 ntBASIC9.07□□□□□ -0.96
SCAPERQ9BY12 ASB8-215ENST00000540782 659 ntTSL 3 BASIC9.07□□□□□ -0.96
SCAPERQ9BY12 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC9.07□□□□□ -0.96
SCAPERQ9BY12 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC9.07□□□□□ -0.96
SCAPERQ9BY12 AL359513.1-201ENST00000614364 557 ntBASIC9.07□□□□□ -0.96
SCAPERQ9BY12 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC9.07□□□□□ -0.96
SCAPERQ9BY12 IL1RAP-202ENST00000317757 5413 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
SCAPERQ9BY12 LINC02019-201ENST00000608605 2060 ntBASIC9.07□□□□□ -0.96
SCAPERQ9BY12 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC9.07□□□□□ -0.96
SCAPERQ9BY12 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
SCAPERQ9BY12 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC9.07□□□□□ -0.96
SCAPERQ9BY12 ALG13-224ENST00000610588 4175 ntTSL 2 BASIC9.07□□□□□ -0.96
SCAPERQ9BY12 CDY2A-201ENST00000250838 1954 ntAPPRIS ALT1 BASIC9.07□□□□□ -0.96
SCAPERQ9BY12 CTNNA1P1-201ENST00000515849 2728 ntBASIC9.07□□□□□ -0.96
SCAPERQ9BY12 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC9.07□□□□□ -0.96
SCAPERQ9BY12 FAM227A-205ENST00000535113 10322 ntAPPRIS ALT2 TSL 5 BASIC9.07□□□□□ -0.96
SCAPERQ9BY12 MROH3P-201ENST00000435735 2676 ntBASIC9.07□□□□□ -0.96
SCAPERQ9BY12 DDX58-202ENST00000379883 4353 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
SCAPERQ9BY12 MME-203ENST00000460393 5622 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
SCAPERQ9BY12 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC9.07□□□□□ -0.96
SCAPERQ9BY12 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.96
SCAPERQ9BY12 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.96
SCAPERQ9BY12 AC011815.2-201ENST00000618230 2021 ntBASIC9.06□□□□□ -0.96
SCAPERQ9BY12 RNU11-6P-201ENST00000391127 133 ntBASIC9.06□□□□□ -0.96
SCAPERQ9BY12 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
SCAPERQ9BY12 AL645927.1-201ENST00000396783 406 ntBASIC9.06□□□□□ -0.96
SCAPERQ9BY12 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC9.06□□□□□ -0.96
SCAPERQ9BY12 HMGB3P24-201ENST00000433260 622 ntBASIC9.06□□□□□ -0.96
SCAPERQ9BY12 CNOT7P2-201ENST00000441051 832 ntBASIC9.06□□□□□ -0.96
SCAPERQ9BY12 RPL35AP19-201ENST00000469425 329 ntBASIC9.06□□□□□ -0.96
SCAPERQ9BY12 RN7SL547P-201ENST00000490793 290 ntBASIC9.06□□□□□ -0.96
SCAPERQ9BY12 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC9.06□□□□□ -0.96
SCAPERQ9BY12 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
SCAPERQ9BY12 SETP3-201ENST00000581726 813 ntBASIC9.06□□□□□ -0.96
SCAPERQ9BY12 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.96
SCAPERQ9BY12 GAGE1-204ENST00000619375 2873 ntAPPRIS P1 TSL 5 BASIC9.06□□□□□ -0.96
SCAPERQ9BY12 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC9.06□□□□□ -0.96
SCAPERQ9BY12 AC068733.2-201ENST00000605434 1418 ntBASIC9.06□□□□□ -0.96
SCAPERQ9BY12 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC9.06□□□□□ -0.96
SCAPERQ9BY12 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
SCAPERQ9BY12 PARP4P2-201ENST00000446672 3326 ntBASIC9.06□□□□□ -0.96
SCAPERQ9BY12 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC9.06□□□□□ -0.96
SCAPERQ9BY12 MTIF2-201ENST00000263629 2528 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
SCAPERQ9BY12 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC9.06□□□□□ -0.96
SCAPERQ9BY12 ASB4-202ENST00000325885 3825 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
SCAPERQ9BY12 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
SCAPERQ9BY12 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC9.06□□□□□ -0.96
SCAPERQ9BY12 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC9.06□□□□□ -0.96
SCAPERQ9BY12 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC9.06□□□□□ -0.96
SCAPERQ9BY12 AP001541.1-201ENST00000623322 1904 ntBASIC9.06□□□□□ -0.96
SCAPERQ9BY12 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC9.05□□□□□ -0.96
SCAPERQ9BY12 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC9.05□□□□□ -0.96
SCAPERQ9BY12 EEF1A1P29-201ENST00000416082 1096 ntBASIC9.05□□□□□ -0.96
SCAPERQ9BY12 CYP4F30P-202ENST00000420048 405 ntBASIC9.05□□□□□ -0.96
SCAPERQ9BY12 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC9.05□□□□□ -0.96
SCAPERQ9BY12 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC9.05□□□□□ -0.96
SCAPERQ9BY12 RPS7P3-201ENST00000443360 580 ntBASIC9.05□□□□□ -0.96
SCAPERQ9BY12 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC9.05□□□□□ -0.96
SCAPERQ9BY12 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC9.05□□□□□ -0.96
SCAPERQ9BY12 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC9.05□□□□□ -0.96
SCAPERQ9BY12 AC096736.3-201ENST00000510753 993 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
SCAPERQ9BY12 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC9.05□□□□□ -0.96
SCAPERQ9BY12 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC9.05□□□□□ -0.96
SCAPERQ9BY12 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC9.05□□□□□ -0.96
SCAPERQ9BY12 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC9.05□□□□□ -0.96
SCAPERQ9BY12 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC9.05□□□□□ -0.96
SCAPERQ9BY12 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC9.05□□□□□ -0.96
SCAPERQ9BY12 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC9.05□□□□□ -0.96
SCAPERQ9BY12 AL137246.2-201ENST00000613439 662 ntBASIC9.05□□□□□ -0.96
SCAPERQ9BY12 VN1R1-201ENST00000321039 2353 ntAPPRIS P1 BASIC9.05□□□□□ -0.96
SCAPERQ9BY12 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
SCAPERQ9BY12 CARF-202ENST00000402905 5938 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
SCAPERQ9BY12 LRP2BP-202ENST00000505916 2302 ntAPPRIS P1 TSL 2 BASIC9.05□□□□□ -0.96
SCAPERQ9BY12 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC9.05□□□□□ -0.96
SCAPERQ9BY12 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
SCAPERQ9BY12 UNC79-202ENST00000393151 7908 ntTSL 5 BASIC9.05□□□□□ -0.96
SCAPERQ9BY12 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC9.05□□□□□ -0.96
SCAPERQ9BY12 AL049634.1-201ENST00000453770 1720 ntBASIC9.05□□□□□ -0.96
SCAPERQ9BY12 HHIP-201ENST00000296575 10072 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
SCAPERQ9BY12 RNA5SP234-201ENST00000363916 119 ntBASIC9.05□□□□□ -0.96
SCAPERQ9BY12 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC9.05□□□□□ -0.96
SCAPERQ9BY12 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC9.05□□□□□ -0.96
SCAPERQ9BY12 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC9.05□□□□□ -0.96
SCAPERQ9BY12 AL606490.1-201ENST00000452266 765 ntBASIC9.05□□□□□ -0.96
SCAPERQ9BY12 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC9.05□□□□□ -0.96
SCAPERQ9BY12 AC022215.1-201ENST00000481770 362 ntBASIC9.05□□□□□ -0.96
SCAPERQ9BY12 OR7E157P-201ENST00000494376 911 ntBASIC9.05□□□□□ -0.96
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms