Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 AC100767.2-201ENST00000604840 693 ntBASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 MIR7159-201ENST00000620587 66 ntBASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 AC129915.3-201ENST00000634128 948 ntBASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 AC025263.1-201ENST00000501387 2538 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 TCF12-205ENST00000537840 1598 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 AL390726.6-201ENST00000637760 1654 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 BCO2-214ENST00000532593 1647 ntTSL 2 BASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 CASC19-238ENST00000641523 1558 ntBASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 OR7A17-202ENST00000641113 3639 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 AL157831.2-201ENST00000564681 3095 ntBASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 OR7E25P-201ENST00000344844 931 ntBASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 SNORA81-201ENST00000408493 178 ntBASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 AC104843.2-201ENST00000427666 297 ntBASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 OR6C71P-201ENST00000432580 913 ntBASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 AL391987.1-201ENST00000441025 200 ntBASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 AC073109.1-201ENST00000445066 978 ntBASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 RPL5P16-201ENST00000471467 790 ntBASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 AC092824.1-201ENST00000483524 576 ntBASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 AC011411.1-201ENST00000509592 876 ntBASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 AC010343.2-201ENST00000510162 224 ntBASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 OR5H7P-201ENST00000514084 930 ntBASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 AP004607.6-201ENST00000525033 1202 ntBASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 AC125612.1-201ENST00000547580 377 ntBASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 AC009120.3-201ENST00000563335 499 ntBASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 AC233702.7-202ENST00000582941 211 ntBASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 LAPTM4BP2-201ENST00000604542 446 ntBASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 ERC2-214ENST00000612797 3831 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 AC012254.5-201ENST00000623573 478 ntBASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 MIR4302-201ENST00000638058 60 ntBASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 AC099654.3-201ENST00000447087 1546 ntBASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 KARSP1-201ENST00000451871 1752 ntBASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC3Q9BQI4 OR2T7-201ENST00000641057 3463 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 NUMB-229ENST00000557597 3547 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 AL137141.1-201ENST00000624622 4836 ntBASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 AC090616.2-201ENST00000358484 431 ntTSL 3 BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 U3.43-201ENST00000410734 213 ntBASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 CDY8P-201ENST00000428380 1279 ntBASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 RPL12P16-201ENST00000431098 498 ntBASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 NAP1L4P3-201ENST00000432820 1147 ntBASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 OR3D1P-201ENST00000438288 955 ntBASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 CDY20P-201ENST00000447528 1279 ntBASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 AC002553.3-201ENST00000453002 341 ntBASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 SNX18P26-201ENST00000458433 740 ntBASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms