Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MIR1286-201ENST00000408112 78 ntBASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 AC073594.1-201ENST00000462065 364 ntBASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 CBX1P5-201ENST00000475330 559 ntBASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 AC024558.1-201ENST00000505008 528 ntBASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 RNA5SP400-201ENST00000517155 111 ntBASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 HMGN2P36-201ENST00000529541 409 ntBASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 USP29-201ENST00000254181 3705 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 MLLT3-203ENST00000380338 6772 ntAPPRIS P3 TSL 1 (best) BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 AL049634.1-201ENST00000453770 1720 ntBASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 AL359976.1-201ENST00000418655 3528 ntBASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 AC060780.1-202ENST00000590740 5084 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 SYTL5-201ENST00000297875 4722 ntTSL 5 BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 RUNDC3A-AS1-202ENST00000588097 5203 ntTSL 5 BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 Z80107.2-201ENST00000445127 392 ntBASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 FTLP8-201ENST00000446770 267 ntBASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 RN7SL165P-201ENST00000477476 291 ntBASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 AL136131.3-201ENST00000607600 188 ntBASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 Mico1.1-201ENST00000611698 204 ntBASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 AL450226.2-201ENST00000622913 439 ntBASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 ATM-229ENST00000639953 587 ntTSL 5 BASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 OR7A1P-202ENST00000641542 1158 ntBASIC7.41□□□□□ -1.22
CCDC88AQ3V6T2 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC7.4□□□□□ -1.22
CCDC88AQ3V6T2 AC127024.8-201ENST00000623719 2094 ntBASIC7.4□□□□□ -1.22
CCDC88AQ3V6T2 AL161756.3-201ENST00000641216 2071 ntBASIC7.4□□□□□ -1.22
CCDC88AQ3V6T2 MAP4K4-219ENST00000625522 7458 ntAPPRIS P5 TSL 5 BASIC7.4□□□□□ -1.22
CCDC88AQ3V6T2 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC7.4□□□□□ -1.22
CCDC88AQ3V6T2 KMT2A-213ENST00000534358 16602 ntAPPRIS ALT2 TSL 1 (best) BASIC7.4□□□□□ -1.22
CCDC88AQ3V6T2 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
CCDC88AQ3V6T2 ZNF521-203ENST00000538137 4253 ntAPPRIS P1 TSL 2 BASIC7.4□□□□□ -1.22
CCDC88AQ3V6T2 VTCN1-202ENST00000359008 2581 ntAPPRIS ALT2 TSL 5 BASIC7.4□□□□□ -1.22
CCDC88AQ3V6T2 AC092692.1-201ENST00000623625 2595 ntBASIC7.4□□□□□ -1.22
CCDC88AQ3V6T2 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
CCDC88AQ3V6T2 ZC3H13-201ENST00000242848 8018 ntAPPRIS ALT2 TSL 5 BASIC7.4□□□□□ -1.22
CCDC88AQ3V6T2 ATP2B4-204ENST00000367218 8918 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
CCDC88AQ3V6T2 CDH12-201ENST00000382254 4164 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
CCDC88AQ3V6T2 AC103591.2-201ENST00000265259 766 ntBASIC7.4□□□□□ -1.23
CCDC88AQ3V6T2 CCDC125-201ENST00000383374 2006 ntTSL 5 BASIC7.4□□□□□ -1.23
CCDC88AQ3V6T2 SNORA56-201ENST00000383966 129 ntBASIC7.4□□□□□ -1.23
CCDC88AQ3V6T2 VTI1A-201ENST00000393077 4131 ntAPPRIS P1 TSL 2 BASIC7.4□□□□□ -1.23
CCDC88AQ3V6T2 RN7SKP125-201ENST00000410481 302 ntBASIC7.4□□□□□ -1.23
CCDC88AQ3V6T2 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC7.4□□□□□ -1.23
CCDC88AQ3V6T2 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC7.4□□□□□ -1.23
CCDC88AQ3V6T2 Z84478.1-201ENST00000438230 1219 ntBASIC7.4□□□□□ -1.23
CCDC88AQ3V6T2 AL606490.1-201ENST00000452266 765 ntBASIC7.4□□□□□ -1.23
CCDC88AQ3V6T2 OR2AO1P-201ENST00000476497 403 ntBASIC7.4□□□□□ -1.23
CCDC88AQ3V6T2 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC7.4□□□□□ -1.23
CCDC88AQ3V6T2 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC7.4□□□□□ -1.23
CCDC88AQ3V6T2 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC7.4□□□□□ -1.23
CCDC88AQ3V6T2 RN7SKP288-201ENST00000516227 268 ntBASIC7.4□□□□□ -1.23
CCDC88AQ3V6T2 SNORA43.3-201ENST00000517240 103 ntBASIC7.4□□□□□ -1.23
CCDC88AQ3V6T2 GNG2-208ENST00000554875 430 ntTSL 5 BASIC7.4□□□□□ -1.23
CCDC88AQ3V6T2 AC020765.1-201ENST00000604296 328 ntBASIC7.4□□□□□ -1.23
CCDC88AQ3V6T2 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC7.4□□□□□ -1.23
CCDC88AQ3V6T2 AL121612.2-201ENST00000612261 482 ntBASIC7.4□□□□□ -1.23
CCDC88AQ3V6T2 AP001784.1-201ENST00000624107 428 ntBASIC7.4□□□□□ -1.23
CCDC88AQ3V6T2 AC022726.2-201ENST00000634673 547 ntBASIC7.4□□□□□ -1.23
CCDC88AQ3V6T2 GCNT1-202ENST00000442371 5972 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
CCDC88AQ3V6T2 KIAA1958-203ENST00000536272 7650 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
CCDC88AQ3V6T2 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
CCDC88AQ3V6T2 DSCAM-203ENST00000617870 6176 ntTSL 5 BASIC7.4□□□□□ -1.23
CCDC88AQ3V6T2 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC7.4□□□□□ -1.23
CCDC88AQ3V6T2 CASC19-248ENST00000641674 1356 ntBASIC7.4□□□□□ -1.23
CCDC88AQ3V6T2 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC7.4□□□□□ -1.23
CCDC88AQ3V6T2 CAST-222ENST00000508579 1758 ntTSL 2 BASIC7.4□□□□□ -1.23
CCDC88AQ3V6T2 Z82209.2-201ENST00000623410 2012 ntBASIC7.39□□□□□ -1.23
CCDC88AQ3V6T2 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC88AQ3V6T2 RSAD2-201ENST00000382040 3519 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC88AQ3V6T2 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC7.39□□□□□ -1.23
CCDC88AQ3V6T2 A2M-201ENST00000318602 4844 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC88AQ3V6T2 GABRQ-201ENST00000598523 6172 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC88AQ3V6T2 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC7.39□□□□□ -1.23
CCDC88AQ3V6T2 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC7.39□□□□□ -1.23
CCDC88AQ3V6T2 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC7.39□□□□□ -1.23
CCDC88AQ3V6T2 VN1R110P-201ENST00000438988 971 ntBASIC7.39□□□□□ -1.23
CCDC88AQ3V6T2 AC092967.1-201ENST00000449016 481 ntBASIC7.39□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 126.6 ms