Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC000095.2-202ENST00000637415 154 ntBASIC5.78□□□□□ -1.48
FOXA1P55317 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
FOXA1P55317 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
FOXA1P55317 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC5.78□□□□□ -1.48
FOXA1P55317 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
FOXA1P55317 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
FOXA1P55317 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC5.78□□□□□ -1.48
FOXA1P55317 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
FOXA1P55317 AC004014.2-201ENST00000623718 5122 ntBASIC5.77□□□□□ -1.49
FOXA1P55317 RUFY2-201ENST00000265865 2033 ntTSL 2 BASIC5.77□□□□□ -1.49
FOXA1P55317 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
FOXA1P55317 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
FOXA1P55317 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC5.77□□□□□ -1.49
FOXA1P55317 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
FOXA1P55317 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC5.77□□□□□ -1.49
FOXA1P55317 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
FOXA1P55317 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
FOXA1P55317 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC5.77□□□□□ -1.49
FOXA1P55317 C3orf14-201ENST00000232519 690 ntAPPRIS P1 TSL 3 BASIC5.77□□□□□ -1.49
FOXA1P55317 TINAG-203ENST00000370869 782 ntTSL 3 BASIC5.77□□□□□ -1.49
FOXA1P55317 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
FOXA1P55317 MRPL35-203ENST00000409180 651 ntAPPRIS ALT1 TSL 3 BASIC5.77□□□□□ -1.49
FOXA1P55317 AC009965.1-201ENST00000411436 570 ntTSL 4 BASIC5.77□□□□□ -1.49
FOXA1P55317 AC004012.1-201ENST00000416593 534 ntTSL 4 BASIC5.77□□□□□ -1.49
FOXA1P55317 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC5.77□□□□□ -1.49
FOXA1P55317 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC5.77□□□□□ -1.49
FOXA1P55317 LINC01728-201ENST00000428529 524 ntTSL 2 BASIC5.77□□□□□ -1.49
FOXA1P55317 RPS12P17-201ENST00000438591 377 ntBASIC5.77□□□□□ -1.49
FOXA1P55317 RPL12P49-201ENST00000441100 121 ntBASIC5.77□□□□□ -1.49
FOXA1P55317 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC5.77□□□□□ -1.49
FOXA1P55317 AC002553.3-201ENST00000453002 341 ntBASIC5.77□□□□□ -1.49
FOXA1P55317 AC104164.1-201ENST00000460282 590 ntBASIC5.77□□□□□ -1.49
FOXA1P55317 AL603882.1-201ENST00000463059 681 ntBASIC5.77□□□□□ -1.49
FOXA1P55317 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
FOXA1P55317 AC090058.1-201ENST00000498788 435 ntBASIC5.77□□□□□ -1.49
FOXA1P55317 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC5.77□□□□□ -1.49
FOXA1P55317 GUSBP9-201ENST00000510138 584 ntBASIC5.77□□□□□ -1.49
FOXA1P55317 IGKV2-19-201ENST00000518132 283 ntBASIC5.77□□□□□ -1.49
FOXA1P55317 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC5.77□□□□□ -1.49
FOXA1P55317 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC5.77□□□□□ -1.49
FOXA1P55317 AC090424.1-201ENST00000535243 736 ntBASIC5.77□□□□□ -1.49
FOXA1P55317 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
FOXA1P55317 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC5.77□□□□□ -1.49
FOXA1P55317 MIR4420-201ENST00000583944 77 ntBASIC5.77□□□□□ -1.49
FOXA1P55317 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC5.77□□□□□ -1.49
FOXA1P55317 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC5.77□□□□□ -1.49
FOXA1P55317 NDUFB9P1-201ENST00000604683 510 ntBASIC5.77□□□□□ -1.49
FOXA1P55317 BPIFA4P-204ENST00000605211 656 ntTSL 2 BASIC5.77□□□□□ -1.49
FOXA1P55317 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC5.77□□□□□ -1.49
FOXA1P55317 AC012676.3-201ENST00000614983 479 ntBASIC5.77□□□□□ -1.49
FOXA1P55317 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
FOXA1P55317 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC5.77□□□□□ -1.49
FOXA1P55317 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
FOXA1P55317 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
FOXA1P55317 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
FOXA1P55317 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
FOXA1P55317 PAPD4-203ENST00000428308 2204 ntAPPRIS P3 TSL 2 BASIC5.76□□□□□ -1.49
FOXA1P55317 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.76□□□□□ -1.49
FOXA1P55317 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
FOXA1P55317 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.76□□□□□ -1.49
FOXA1P55317 AC093297.3-201ENST00000607056 2517 ntBASIC5.76□□□□□ -1.49
FOXA1P55317 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
FOXA1P55317 CCAT2-201ENST00000630920 1752 ntBASIC5.76□□□□□ -1.49
FOXA1P55317 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC5.76□□□□□ -1.49
FOXA1P55317 OR7A10-201ENST00000248058 930 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
FOXA1P55317 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
FOXA1P55317 RN7SKP128-201ENST00000364270 303 ntBASIC5.76□□□□□ -1.49
FOXA1P55317 RNA5SP211-201ENST00000365516 117 ntBASIC5.76□□□□□ -1.49
FOXA1P55317 TPT1-204ENST00000379060 764 ntTSL 5 BASIC5.76□□□□□ -1.49
FOXA1P55317 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
FOXA1P55317 PSMA6P1-201ENST00000400275 741 ntBASIC5.76□□□□□ -1.49
FOXA1P55317 AL035422.1-201ENST00000414193 397 ntBASIC5.76□□□□□ -1.49
FOXA1P55317 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC5.76□□□□□ -1.49
FOXA1P55317 RPS7P8-201ENST00000418311 581 ntBASIC5.76□□□□□ -1.49
FOXA1P55317 LINC01058-201ENST00000420694 448 ntTSL 5 BASIC5.76□□□□□ -1.49
FOXA1P55317 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC5.76□□□□□ -1.49
FOXA1P55317 AC096632.2-201ENST00000438139 1239 ntBASIC5.76□□□□□ -1.49
FOXA1P55317 AC064862.5-201ENST00000440618 334 ntBASIC5.76□□□□□ -1.49
FOXA1P55317 SEPT14P12-201ENST00000442280 560 ntBASIC5.76□□□□□ -1.49
FOXA1P55317 FTLP8-201ENST00000446770 267 ntBASIC5.76□□□□□ -1.49
FOXA1P55317 AC097359.1-201ENST00000447946 463 ntBASIC5.76□□□□□ -1.49
FOXA1P55317 RSU1P1-201ENST00000453416 441 ntBASIC5.76□□□□□ -1.49
FOXA1P55317 FRG2FP-204ENST00000453982 852 ntBASIC5.76□□□□□ -1.49
FOXA1P55317 RN7SL552P-201ENST00000462094 276 ntBASIC5.76□□□□□ -1.49
FOXA1P55317 MRPL57P6-201ENST00000506570 309 ntBASIC5.76□□□□□ -1.49
FOXA1P55317 NACAP5-201ENST00000509863 636 ntBASIC5.76□□□□□ -1.49
FOXA1P55317 AC113191.1-201ENST00000517759 403 ntBASIC5.76□□□□□ -1.49
FOXA1P55317 IGHVIII-11-1-201ENST00000522733 267 ntBASIC5.76□□□□□ -1.49
FOXA1P55317 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC5.76□□□□□ -1.49
FOXA1P55317 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC5.76□□□□□ -1.49
FOXA1P55317 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.76□□□□□ -1.49
FOXA1P55317 AC126615.2-201ENST00000553003 515 ntBASIC5.76□□□□□ -1.49
FOXA1P55317 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
FOXA1P55317 AC007346.2-201ENST00000564816 892 ntBASIC5.76□□□□□ -1.49
FOXA1P55317 AC004232.2-201ENST00000574245 821 ntBASIC5.76□□□□□ -1.49
FOXA1P55317 MIR4701-201ENST00000583094 63 ntBASIC5.76□□□□□ -1.49
FOXA1P55317 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC5.76□□□□□ -1.49
FOXA1P55317 AL512652.1-201ENST00000619006 500 ntBASIC5.76□□□□□ -1.49
FOXA1P55317 LINC01435-220ENST00000630847 714 ntTSL 5 BASIC5.76□□□□□ -1.49
FOXA1P55317 AC104461.1-201ENST00000637430 817 ntTSL 5 BASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 114.1 ms