Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 GAPDHP42-201ENST00000406848 981 ntBASIC5.96□□□□□ -1.46
COL6A3P12111 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
COL6A3P12111 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.96□□□□□ -1.46
COL6A3P12111 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC5.96□□□□□ -1.46
COL6A3P12111 snoU13.20-201ENST00000459180 104 ntBASIC5.96□□□□□ -1.46
COL6A3P12111 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC5.96□□□□□ -1.46
COL6A3P12111 RNU6-941P-201ENST00000516346 108 ntBASIC5.96□□□□□ -1.46
COL6A3P12111 INTS9-AS1-201ENST00000520055 548 ntTSL 5 BASIC5.96□□□□□ -1.46
COL6A3P12111 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.96□□□□□ -1.46
COL6A3P12111 LIMCH1-203ENST00000396595 5740 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL6A3P12111 SUPT6H-201ENST00000314616 6523 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL6A3P12111 LGALS8-212ENST00000450372 6281 ntAPPRIS P4 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL6A3P12111 TRAK2-201ENST00000332624 6510 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL6A3P12111 ZDHHC21-201ENST00000380916 9160 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL6A3P12111 DCDC2-201ENST00000378450 3684 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL6A3P12111 AC007938.2-201ENST00000604666 2634 ntBASIC5.95□□□□□ -1.46
COL6A3P12111 KCNA2-205ENST00000633222 11877 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
COL6A3P12111 PKD1L2-203ENST00000525539 7379 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL6A3P12111 MAP7D3-204ENST00000370663 4446 ntAPPRIS ALT2 TSL 2 BASIC5.95□□□□□ -1.46
COL6A3P12111 TRIM5-202ENST00000380034 2991 ntAPPRIS P1 TSL 2 BASIC5.95□□□□□ -1.46
COL6A3P12111 RPL10P10-201ENST00000403509 664 ntBASIC5.95□□□□□ -1.46
COL6A3P12111 ERMN-202ENST00000409216 746 ntTSL 4 BASIC5.95□□□□□ -1.46
COL6A3P12111 AL138831.1-201ENST00000415144 209 ntTSL 3 BASIC5.95□□□□□ -1.46
COL6A3P12111 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC5.95□□□□□ -1.46
COL6A3P12111 TRY2P-201ENST00000448860 689 ntBASIC5.95□□□□□ -1.46
COL6A3P12111 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC5.95□□□□□ -1.46
COL6A3P12111 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL6A3P12111 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC5.95□□□□□ -1.46
COL6A3P12111 NFAT5-209ENST00000567239 6376 ntAPPRIS ALT1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL6A3P12111 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC5.95□□□□□ -1.46
COL6A3P12111 ZNF585A-205ENST00000588354 596 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL6A3P12111 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC5.95□□□□□ -1.46
COL6A3P12111 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL6A3P12111 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC5.95□□□□□ -1.46
COL6A3P12111 LRRC7-201ENST00000035383 5000 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL6A3P12111 VTCN1-202ENST00000359008 2581 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
COL6A3P12111 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
COL6A3P12111 KLHL2-204ENST00000506761 2169 ntTSL 5 BASIC5.95□□□□□ -1.46
COL6A3P12111 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC5.95□□□□□ -1.46
COL6A3P12111 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL6A3P12111 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL6A3P12111 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL6A3P12111 MYH13-201ENST00000252172 5992 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL6A3P12111 TNRC6C-202ENST00000335749 9740 ntAPPRIS P4 TSL 5 BASIC5.95□□□□□ -1.46
COL6A3P12111 PTPRM-203ENST00000400060 5030 ntTSL 5 BASIC5.95□□□□□ -1.46
COL6A3P12111 UNC45B-201ENST00000268876 5679 ntAPPRIS P3 TSL 5 BASIC5.95□□□□□ -1.46
COL6A3P12111 NRIR-201ENST00000366140 799 ntTSL 3 BASIC5.95□□□□□ -1.46
COL6A3P12111 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC5.95□□□□□ -1.46
COL6A3P12111 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC5.95□□□□□ -1.46
COL6A3P12111 AC010343.2-201ENST00000510162 224 ntBASIC5.95□□□□□ -1.46
COL6A3P12111 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC5.95□□□□□ -1.46
COL6A3P12111 OR56A7P-201ENST00000524865 941 ntBASIC5.95□□□□□ -1.46
COL6A3P12111 AP001781.1-201ENST00000530977 207 ntBASIC5.95□□□□□ -1.46
COL6A3P12111 AC084824.1-201ENST00000550917 1005 ntBASIC5.95□□□□□ -1.46
COL6A3P12111 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC5.95□□□□□ -1.46
COL6A3P12111 WWOX-217ENST00000620008 450 ntTSL 2 BASIC5.95□□□□□ -1.46
COL6A3P12111 LINC00559-201ENST00000569476 3867 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL6A3P12111 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC5.95□□□□□ -1.46
COL6A3P12111 EIF4ENIF1-205ENST00000397523 3420 ntTSL 5 BASIC5.95□□□□□ -1.46
COL6A3P12111 GPR107-203ENST00000372410 6991 ntTSL 5 BASIC5.95□□□□□ -1.46
COL6A3P12111 AL136317.2-201ENST00000619851 2254 ntTSL 2 BASIC5.95□□□□□ -1.46
COL6A3P12111 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL6A3P12111 XIST-206ENST00000434839 2865 ntTSL 5 BASIC5.94□□□□□ -1.46
COL6A3P12111 TMEM33-203ENST00000504986 7482 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL6A3P12111 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC5.94□□□□□ -1.46
COL6A3P12111 KLHL3-201ENST00000309755 6806 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL6A3P12111 TACC2-212ENST00000453444 9158 ntTSL 5 BASIC5.94□□□□□ -1.46
COL6A3P12111 U3.22-201ENST00000391120 215 ntBASIC5.94□□□□□ -1.46
COL6A3P12111 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC5.94□□□□□ -1.46
COL6A3P12111 RN7SL447P-201ENST00000494711 245 ntBASIC5.94□□□□□ -1.46
COL6A3P12111 BGLT3-201ENST00000564523 994 ntBASIC5.94□□□□□ -1.46
COL6A3P12111 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC5.94□□□□□ -1.46
COL6A3P12111 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC5.94□□□□□ -1.46
COL6A3P12111 AC109583.2-201ENST00000617367 129 ntBASIC5.94□□□□□ -1.46
COL6A3P12111 AC112694.2-201ENST00000623697 768 ntBASIC5.94□□□□□ -1.46
COL6A3P12111 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC5.94□□□□□ -1.46
COL6A3P12111 AC011447.6-201ENST00000623510 2598 ntBASIC5.94□□□□□ -1.46
COL6A3P12111 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC5.94□□□□□ -1.46
COL6A3P12111 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL6A3P12111 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL6A3P12111 ZNF493-201ENST00000339914 1665 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL6A3P12111 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL6A3P12111 AF131215.2-201ENST00000531549 1710 ntBASIC5.94□□□□□ -1.46
COL6A3P12111 NLRP3P1-201ENST00000622303 1785 ntBASIC5.94□□□□□ -1.46
COL6A3P12111 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL6A3P12111 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC5.94□□□□□ -1.46
COL6A3P12111 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL6A3P12111 ZNF658B-201ENST00000602828 3408 ntBASIC5.94□□□□□ -1.46
COL6A3P12111 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.46
COL6A3P12111 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC5.94□□□□□ -1.46
COL6A3P12111 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL6A3P12111 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
COL6A3P12111 RNA5SP487-201ENST00000410186 122 ntBASIC5.94□□□□□ -1.46
COL6A3P12111 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC5.94□□□□□ -1.46
COL6A3P12111 SNORA59A-201ENST00000459326 152 ntBASIC5.94□□□□□ -1.46
COL6A3P12111 AC073594.1-201ENST00000462065 364 ntBASIC5.94□□□□□ -1.46
COL6A3P12111 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC5.94□□□□□ -1.46
COL6A3P12111 IGKV3OR22-2-201ENST00000517943 313 ntBASIC5.94□□□□□ -1.46
COL6A3P12111 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC5.94□□□□□ -1.46
COL6A3P12111 OR8G5-201ENST00000524943 1041 ntBASIC5.94□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms