Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 SNORA70H-201ENST00000383910 135 ntBASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 SNORA70J-201ENST00000384182 135 ntBASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 AC005522.1-201ENST00000395416 346 ntBASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 AC066692.1-201ENST00000421721 457 ntBASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 AC007283.1-201ENST00000434645 445 ntTSL 5 BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 AL133351.3-201ENST00000454998 193 ntBASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 AC083906.1-201ENST00000509298 406 ntBASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 OR4D12P-201ENST00000509361 911 ntBASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 SETP21-201ENST00000514799 892 ntBASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 VEPH1-219ENST00000537559 992 ntTSL 5 BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 AC007346.1-201ENST00000569208 867 ntBASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 AC097467.4-201ENST00000605504 141 ntBASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 AC092681.3-201ENST00000609463 678 ntBASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 LINC00484-208ENST00000609752 591 ntTSL 4 BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 LINC02341-202ENST00000637462 1295 ntTSL 5 BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
TM9SF3Q9HD45 AL354854.1-201ENST00000455940 1363 ntBASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 RASSF8-216ENST00000615708 1328 ntTSL 5 BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 AL136984.1-201ENST00000607611 1893 ntBASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 RNU1-46P-201ENST00000384425 164 ntBASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 RNA5SP251-201ENST00000410614 137 ntBASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 RPS3P2-201ENST00000421346 701 ntBASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 MAGI2-AS3-210ENST00000448636 798 ntTSL 5 BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 PPIAP7-201ENST00000454070 489 ntBASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 SETP20-201ENST00000457046 852 ntBASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 AC023194.2-201ENST00000465398 406 ntBASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 RPL7P51-201ENST00000490532 749 ntBASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 AC104109.1-201ENST00000498563 436 ntBASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 AP000620.1-201ENST00000527147 504 ntBASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 AC125612.1-201ENST00000547580 377 ntBASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 AC092332.1-201ENST00000563684 829 ntBASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 AC040977.1-201ENST00000573222 343 ntTSL 3 BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 TEX41-218ENST00000596540 882 ntTSL 5 BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 RPL12P48-201ENST00000605620 304 ntBASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 AC004801.6-201ENST00000616571 978 ntBASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 AC005393.1-201ENST00000617916 584 ntBASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 AL512356.3-201ENST00000623005 461 ntBASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 TTC41P-205ENST00000551270 3963 ntBASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
TM9SF3Q9HD45 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 118.6 ms