Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 IGHVII-51-2-201ENST00000519778 259 ntBASIC4.51□□□□□ -1.69
FOXA3P55318 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC4.51□□□□□ -1.69
FOXA3P55318 AP003119.2-201ENST00000528075 336 ntTSL 3 BASIC4.51□□□□□ -1.69
FOXA3P55318 AL121594.2-201ENST00000541658 472 ntBASIC4.51□□□□□ -1.69
FOXA3P55318 AC092865.1-201ENST00000544395 1023 ntBASIC4.51□□□□□ -1.69
FOXA3P55318 AC084824.2-201ENST00000548906 345 ntBASIC4.51□□□□□ -1.69
FOXA3P55318 MYL6-213ENST00000549017 502 ntTSL 3 BASIC4.51□□□□□ -1.69
FOXA3P55318 DCN-215ENST00000550099 719 ntTSL 2 BASIC4.51□□□□□ -1.69
FOXA3P55318 CBX5-204ENST00000550411 894 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
FOXA3P55318 AC126615.2-201ENST00000553003 515 ntBASIC4.51□□□□□ -1.69
FOXA3P55318 AL355102.4-201ENST00000553638 738 ntTSL 2 BASIC4.51□□□□□ -1.69
FOXA3P55318 LINC01917-201ENST00000565170 1037 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
FOXA3P55318 AC092718.4-201ENST00000566639 716 ntBASIC4.51□□□□□ -1.69
FOXA3P55318 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC4.51□□□□□ -1.69
FOXA3P55318 AC090286.3-201ENST00000573133 187 ntBASIC4.51□□□□□ -1.69
FOXA3P55318 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC4.51□□□□□ -1.69
FOXA3P55318 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC4.51□□□□□ -1.69
FOXA3P55318 AC119403.2-201ENST00000590960 598 ntBASIC4.51□□□□□ -1.69
FOXA3P55318 AC008734.1-201ENST00000594006 537 ntTSL 2 BASIC4.51□□□□□ -1.69
FOXA3P55318 ZNF431-203ENST00000594425 610 ntTSL 2 BASIC4.51□□□□□ -1.69
FOXA3P55318 AL133481.2-203ENST00000607558 139 ntBASIC4.51□□□□□ -1.69
FOXA3P55318 TP53TG1_2.1-201ENST00000611226 182 ntBASIC4.51□□□□□ -1.69
FOXA3P55318 AL589745.2-201ENST00000616366 555 ntTSL 4 BASIC4.51□□□□□ -1.69
FOXA3P55318 RAB28P4-201ENST00000622233 665 ntBASIC4.51□□□□□ -1.69
FOXA3P55318 AC007347.2-201ENST00000623044 180 ntBASIC4.51□□□□□ -1.69
FOXA3P55318 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC4.51□□□□□ -1.69
FOXA3P55318 AC127071.2-201ENST00000623293 527 ntBASIC4.51□□□□□ -1.69
FOXA3P55318 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC4.51□□□□□ -1.69
FOXA3P55318 SKIV2L-216ENST00000628157 210 ntTSL 5 BASIC4.51□□□□□ -1.69
FOXA3P55318 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
FOXA3P55318 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
FOXA3P55318 AC130304.1-201ENST00000622942 2385 ntBASIC4.51□□□□□ -1.69
FOXA3P55318 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
FOXA3P55318 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC4.51□□□□□ -1.69
FOXA3P55318 AC095038.1-201ENST00000429248 1591 ntBASIC4.51□□□□□ -1.69
FOXA3P55318 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC4.51□□□□□ -1.69
FOXA3P55318 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
FOXA3P55318 AC024587.1-201ENST00000505925 2157 ntBASIC4.51□□□□□ -1.69
FOXA3P55318 AC011933.2-201ENST00000578539 2790 ntBASIC4.51□□□□□ -1.69
FOXA3P55318 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
FOXA3P55318 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
FOXA3P55318 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC4.51□□□□□ -1.69
FOXA3P55318 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
FOXA3P55318 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.5□□□□□ -1.69
FOXA3P55318 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
FOXA3P55318 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
FOXA3P55318 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
FOXA3P55318 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC4.5□□□□□ -1.69
FOXA3P55318 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
FOXA3P55318 GTF2H3-201ENST00000228955 1472 ntTSL 2 BASIC4.5□□□□□ -1.69
FOXA3P55318 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC4.5□□□□□ -1.69
FOXA3P55318 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC4.5□□□□□ -1.69
FOXA3P55318 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC4.5□□□□□ -1.69
FOXA3P55318 CYP51A1-204ENST00000450723 1729 ntTSL 2 BASIC4.5□□□□□ -1.69
FOXA3P55318 EEF1A1P16-201ENST00000325349 1414 ntBASIC4.5□□□□□ -1.69
FOXA3P55318 AC005702.3-201ENST00000585345 1447 ntBASIC4.5□□□□□ -1.69
FOXA3P55318 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
FOXA3P55318 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
FOXA3P55318 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
FOXA3P55318 RNA5SP140-201ENST00000364524 92 ntBASIC4.5□□□□□ -1.69
FOXA3P55318 MIR187-201ENST00000385062 109 ntBASIC4.5□□□□□ -1.69
FOXA3P55318 AC121334.1-201ENST00000396414 802 ntBASIC4.5□□□□□ -1.69
FOXA3P55318 S100B-203ENST00000397648 839 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
FOXA3P55318 PEX12P1-201ENST00000400284 1048 ntBASIC4.5□□□□□ -1.69
FOXA3P55318 AL079341.1-201ENST00000404701 1207 ntBASIC4.5□□□□□ -1.69
FOXA3P55318 RPL12P23-201ENST00000405880 490 ntBASIC4.5□□□□□ -1.69
FOXA3P55318 SOD1P1-201ENST00000407803 440 ntBASIC4.5□□□□□ -1.69
FOXA3P55318 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
FOXA3P55318 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC4.5□□□□□ -1.69
FOXA3P55318 AHCYP8-201ENST00000425108 209 ntBASIC4.5□□□□□ -1.69
FOXA3P55318 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC4.5□□□□□ -1.69
FOXA3P55318 AC083862.1-201ENST00000427378 1242 ntBASIC4.5□□□□□ -1.69
FOXA3P55318 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
FOXA3P55318 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC4.5□□□□□ -1.69
FOXA3P55318 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
FOXA3P55318 AC023271.1-201ENST00000445936 1090 ntBASIC4.5□□□□□ -1.69
FOXA3P55318 AL020997.1-201ENST00000446554 349 ntBASIC4.5□□□□□ -1.69
FOXA3P55318 AL161722.1-201ENST00000446972 1032 ntBASIC4.5□□□□□ -1.69
FOXA3P55318 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC4.5□□□□□ -1.69
FOXA3P55318 AL357143.1-201ENST00000457239 934 ntTSL 5 BASIC4.5□□□□□ -1.69
FOXA3P55318 AL354953.1-201ENST00000457852 479 ntTSL 5 BASIC4.5□□□□□ -1.69
FOXA3P55318 RN7SL223P-201ENST00000470401 294 ntBASIC4.5□□□□□ -1.69
FOXA3P55318 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
FOXA3P55318 RN7SL326P-201ENST00000477493 296 ntBASIC4.5□□□□□ -1.69
FOXA3P55318 AC079080.1-201ENST00000479841 822 ntBASIC4.5□□□□□ -1.69
FOXA3P55318 OR7E157P-201ENST00000494376 911 ntBASIC4.5□□□□□ -1.69
FOXA3P55318 ADAM3A-209ENST00000497806 1245 ntTSL 5 BASIC4.5□□□□□ -1.69
FOXA3P55318 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC4.5□□□□□ -1.69
FOXA3P55318 OR7E99P-201ENST00000505750 922 ntBASIC4.5□□□□□ -1.69
FOXA3P55318 ENPP7P3-201ENST00000509123 241 ntBASIC4.5□□□□□ -1.69
FOXA3P55318 RN7SKP196-201ENST00000516267 345 ntBASIC4.5□□□□□ -1.69
FOXA3P55318 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC4.5□□□□□ -1.69
FOXA3P55318 AC022679.2-201ENST00000522186 813 ntTSL 2 BASIC4.5□□□□□ -1.69
FOXA3P55318 AC138832.1-201ENST00000522871 556 ntBASIC4.5□□□□□ -1.69
FOXA3P55318 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC4.5□□□□□ -1.69
FOXA3P55318 AC080011.1-201ENST00000552378 989 ntTSL 3 BASIC4.5□□□□□ -1.69
FOXA3P55318 GNG2-203ENST00000553432 577 ntTSL 4 BASIC4.5□□□□□ -1.69
FOXA3P55318 HNRNPA1P74-201ENST00000560782 835 ntBASIC4.5□□□□□ -1.69
FOXA3P55318 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC4.5□□□□□ -1.69
FOXA3P55318 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms