Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL391358.1-201ENST00000605342 190 ntBASIC5.98□□□□□ -1.45
COL6A3P12111 IPO5-229ENST00000631030 192 ntTSL 5 BASIC5.98□□□□□ -1.45
COL6A3P12111 CYP4F35P-202ENST00000636121 390 ntBASIC5.98□□□□□ -1.45
COL6A3P12111 HSD17B13-201ENST00000302219 2269 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A3P12111 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A3P12111 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A3P12111 SORBS1-203ENST00000354106 3015 ntAPPRIS ALT2 TSL 5 BASIC5.97□□□□□ -1.45
COL6A3P12111 OR7D2-203ENST00000642043 3157 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
COL6A3P12111 CHFR-201ENST00000266880 11133 ntTSL 2 BASIC5.97□□□□□ -1.45
COL6A3P12111 HERC2P2-205ENST00000619021 5746 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL6A3P12111 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL6A3P12111 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL6A3P12111 AC008957.3-201ENST00000624112 2242 ntBASIC5.97□□□□□ -1.45
COL6A3P12111 SNORA67-201ENST00000384423 137 ntBASIC5.97□□□□□ -1.45
COL6A3P12111 OR4K12P-201ENST00000406538 961 ntBASIC5.97□□□□□ -1.45
COL6A3P12111 AC006335.2-201ENST00000437993 330 ntBASIC5.97□□□□□ -1.45
COL6A3P12111 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL6A3P12111 AC117395.1-201ENST00000487390 403 ntBASIC5.97□□□□□ -1.45
COL6A3P12111 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC5.97□□□□□ -1.45
COL6A3P12111 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC5.97□□□□□ -1.45
COL6A3P12111 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC5.97□□□□□ -1.45
COL6A3P12111 TNRC6A-201ENST00000315183 8303 ntAPPRIS ALT2 TSL 5 BASIC5.97□□□□□ -1.45
COL6A3P12111 CHD7-201ENST00000423902 11568 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
COL6A3P12111 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL6A3P12111 CMC2-201ENST00000219400 10301 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL6A3P12111 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL6A3P12111 AL133230.1-201ENST00000431019 4587 ntTSL 2 BASIC5.97□□□□□ -1.45
COL6A3P12111 OR8H1-203ENST00000641600 2927 ntAPPRIS P2 BASIC5.97□□□□□ -1.45
COL6A3P12111 RASGRP3-203ENST00000407811 4210 ntAPPRIS ALT1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL6A3P12111 AP001527.1-201ENST00000566440 1957 ntBASIC5.97□□□□□ -1.45
COL6A3P12111 RBBP4P4-201ENST00000398588 1289 ntBASIC5.97□□□□□ -1.45
COL6A3P12111 RPL7P57-201ENST00000423238 740 ntBASIC5.97□□□□□ -1.45
COL6A3P12111 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.97□□□□□ -1.45
COL6A3P12111 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC5.97□□□□□ -1.45
COL6A3P12111 MTND6P2-201ENST00000512226 524 ntBASIC5.97□□□□□ -1.45
COL6A3P12111 AP006289.1-201ENST00000538089 277 ntBASIC5.97□□□□□ -1.45
COL6A3P12111 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC5.97□□□□□ -1.45
COL6A3P12111 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC5.97□□□□□ -1.45
COL6A3P12111 AC015726.1-202ENST00000602532 475 ntTSL 5 BASIC5.97□□□□□ -1.45
COL6A3P12111 AC019193.2-201ENST00000610012 634 ntBASIC5.97□□□□□ -1.45
COL6A3P12111 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC5.97□□□□□ -1.45
COL6A3P12111 NRP1-201ENST00000265371 5882 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
COL6A3P12111 AL162456.1-201ENST00000634535 2006 ntBASIC5.97□□□□□ -1.45
COL6A3P12111 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL6A3P12111 ACTR3C-206ENST00000613959 5142 ntBASIC5.97□□□□□ -1.45
COL6A3P12111 ZNF101P1-201ENST00000435701 1720 ntBASIC5.97□□□□□ -1.45
COL6A3P12111 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC5.97□□□□□ -1.45
COL6A3P12111 INTS6P1-201ENST00000504674 2530 ntBASIC5.97□□□□□ -1.45
COL6A3P12111 DAZ1-201ENST00000382510 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL6A3P12111 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC5.96□□□□□ -1.45
COL6A3P12111 UBAP2-204ENST00000379238 4289 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.45
COL6A3P12111 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC5.96□□□□□ -1.45
COL6A3P12111 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
COL6A3P12111 NKTR-201ENST00000232978 7343 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
COL6A3P12111 SNORA16A-201ENST00000384342 137 ntBASIC5.96□□□□□ -1.45
COL6A3P12111 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC5.96□□□□□ -1.45
COL6A3P12111 RMRPP5-201ENST00000411156 267 ntBASIC5.96□□□□□ -1.45
COL6A3P12111 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC5.96□□□□□ -1.45
COL6A3P12111 EEF1A1P1-201ENST00000447052 739 ntBASIC5.96□□□□□ -1.45
COL6A3P12111 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC5.96□□□□□ -1.45
COL6A3P12111 AC104164.1-201ENST00000460282 590 ntBASIC5.96□□□□□ -1.45
COL6A3P12111 AC093720.1-201ENST00000505681 714 ntBASIC5.96□□□□□ -1.45
COL6A3P12111 AC025674.1-201ENST00000507074 324 ntBASIC5.96□□□□□ -1.45
COL6A3P12111 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC5.96□□□□□ -1.45
COL6A3P12111 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.45
COL6A3P12111 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC5.96□□□□□ -1.45
COL6A3P12111 AC093227.2-201ENST00000589357 285 ntBASIC5.96□□□□□ -1.45
COL6A3P12111 AL031320.1-201ENST00000604177 357 ntBASIC5.96□□□□□ -1.45
COL6A3P12111 AC245389.1-201ENST00000605141 529 ntBASIC5.96□□□□□ -1.45
COL6A3P12111 MRPS27-202ENST00000457646 2628 ntTSL 2 BASIC5.96□□□□□ -1.45
COL6A3P12111 KIAA1671-202ENST00000401395 6386 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.45
COL6A3P12111 GREB1-201ENST00000234142 8444 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
COL6A3P12111 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
COL6A3P12111 ATP13A5-201ENST00000342358 4027 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
COL6A3P12111 AC005332.9-201ENST00000620266 2921 ntBASIC5.96□□□□□ -1.46
COL6A3P12111 DAZ2-206ENST00000382440 4119 ntAPPRIS P5 TSL 5 BASIC5.96□□□□□ -1.46
COL6A3P12111 OR6J1-201ENST00000540461 4165 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
COL6A3P12111 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
COL6A3P12111 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC5.96□□□□□ -1.46
COL6A3P12111 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC5.96□□□□□ -1.46
COL6A3P12111 CDH13-201ENST00000268613 2722 ntAPPRIS P4 TSL 2 BASIC5.96□□□□□ -1.46
COL6A3P12111 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC5.96□□□□□ -1.46
COL6A3P12111 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC5.96□□□□□ -1.46
COL6A3P12111 DSTNP5-201ENST00000427921 523 ntBASIC5.96□□□□□ -1.46
COL6A3P12111 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC5.96□□□□□ -1.46
COL6A3P12111 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC5.96□□□□□ -1.46
COL6A3P12111 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.96□□□□□ -1.46
COL6A3P12111 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC5.96□□□□□ -1.46
COL6A3P12111 CACNB2-216ENST00000617363 4385 ntTSL 5 BASIC5.96□□□□□ -1.46
COL6A3P12111 SLC24A4-201ENST00000393265 4417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
COL6A3P12111 TEFM-204ENST00000580840 2109 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
COL6A3P12111 AC020912.1-201ENST00000638312 5059 ntTSL 5 BASIC5.96□□□□□ -1.46
COL6A3P12111 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC5.96□□□□□ -1.46
COL6A3P12111 LINC02367-201ENST00000567749 4388 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
COL6A3P12111 DPCR1-203ENST00000636043 5587 ntAPPRIS ALT2 TSL 5 BASIC5.96□□□□□ -1.46
COL6A3P12111 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC5.96□□□□□ -1.46
COL6A3P12111 NWD1-201ENST00000379808 7254 ntTSL 5 BASIC5.96□□□□□ -1.46
COL6A3P12111 KCNA2-208ENST00000638616 3279 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.46
COL6A3P12111 LINC01630-208ENST00000635680 4363 ntTSL 5 BASIC5.96□□□□□ -1.46
COL6A3P12111 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC5.96□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 92.8 ms