Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 BUB1P1-201ENST00000603541 607 ntBASIC5.77□□□□□ -1.49
HOXD4P09016 AL662797.2-201ENST00000607333 527 ntTSL 2 BASIC5.77□□□□□ -1.49
HOXD4P09016 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
HOXD4P09016 DRG1-207ENST00000629688 309 ntTSL 5 BASIC5.77□□□□□ -1.49
HOXD4P09016 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC5.77□□□□□ -1.49
HOXD4P09016 AC062022.1-201ENST00000451026 1684 ntBASIC5.77□□□□□ -1.49
HOXD4P09016 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
HOXD4P09016 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
HOXD4P09016 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC5.77□□□□□ -1.49
HOXD4P09016 AC023245.2-201ENST00000530760 2978 ntBASIC5.77□□□□□ -1.49
HOXD4P09016 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC5.77□□□□□ -1.49
HOXD4P09016 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC5.77□□□□□ -1.49
HOXD4P09016 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
HOXD4P09016 CYP3A5-201ENST00000222982 1720 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
HOXD4P09016 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
HOXD4P09016 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
HOXD4P09016 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC5.76□□□□□ -1.49
HOXD4P09016 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
HOXD4P09016 AC011369.2-201ENST00000624423 1567 ntBASIC5.76□□□□□ -1.49
HOXD4P09016 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
HOXD4P09016 LGALS17A-201ENST00000412609 2562 ntTSL 2 BASIC5.76□□□□□ -1.49
HOXD4P09016 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC5.76□□□□□ -1.49
HOXD4P09016 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
HOXD4P09016 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC5.76□□□□□ -1.49
HOXD4P09016 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC5.76□□□□□ -1.49
HOXD4P09016 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
HOXD4P09016 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
HOXD4P09016 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC5.76□□□□□ -1.49
HOXD4P09016 AC140479.2-201ENST00000421567 3130 ntBASIC5.76□□□□□ -1.49
HOXD4P09016 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HOXD4P09016 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
HOXD4P09016 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
HOXD4P09016 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HOXD4P09016 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC5.76□□□□□ -1.49
HOXD4P09016 SDHAF3-201ENST00000360382 731 ntTSL 2 BASIC5.76□□□□□ -1.49
HOXD4P09016 PRPS1-202ENST00000372419 628 ntTSL 2 BASIC5.76□□□□□ -1.49
HOXD4P09016 AL035422.1-201ENST00000414193 397 ntBASIC5.76□□□□□ -1.49
HOXD4P09016 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC5.76□□□□□ -1.49
HOXD4P09016 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC5.76□□□□□ -1.49
HOXD4P09016 RPSAP65-201ENST00000429660 595 ntBASIC5.76□□□□□ -1.49
HOXD4P09016 CFAP58-AS1-201ENST00000435434 795 ntTSL 2 BASIC5.76□□□□□ -1.49
HOXD4P09016 DNAJA1P5-201ENST00000440278 943 ntBASIC5.76□□□□□ -1.49
HOXD4P09016 SEPHS1P4-201ENST00000446112 1176 ntBASIC5.76□□□□□ -1.49
HOXD4P09016 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC5.76□□□□□ -1.49
HOXD4P09016 C1orf105-204ENST00000460397 462 ntTSL 3 BASIC5.76□□□□□ -1.49
HOXD4P09016 RPL23AP68-201ENST00000480924 445 ntBASIC5.76□□□□□ -1.49
HOXD4P09016 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC5.76□□□□□ -1.49
HOXD4P09016 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC5.76□□□□□ -1.49
HOXD4P09016 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC5.76□□□□□ -1.49
HOXD4P09016 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC5.76□□□□□ -1.49
HOXD4P09016 IGLVIV-64-201ENST00000518581 301 ntBASIC5.76□□□□□ -1.49
HOXD4P09016 AC008662.1-201ENST00000521805 674 ntTSL 3 BASIC5.76□□□□□ -1.49
HOXD4P09016 FAU-203ENST00000525297 355 ntTSL 5 BASIC5.76□□□□□ -1.49
HOXD4P09016 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC5.76□□□□□ -1.49
HOXD4P09016 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC5.76□□□□□ -1.49
HOXD4P09016 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.76□□□□□ -1.49
HOXD4P09016 DAAM1-208ENST00000556135 582 ntTSL 3 BASIC5.76□□□□□ -1.49
HOXD4P09016 AC011468.3-201ENST00000597886 332 ntTSL 3 BASIC5.76□□□□□ -1.49
HOXD4P09016 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC5.76□□□□□ -1.49
HOXD4P09016 AC073389.3-201ENST00000609434 935 ntBASIC5.76□□□□□ -1.49
HOXD4P09016 AL445647.2-201ENST00000615170 130 ntBASIC5.76□□□□□ -1.49
HOXD4P09016 MIR6729-201ENST00000618194 65 ntBASIC5.76□□□□□ -1.49
HOXD4P09016 AP000550.3-201ENST00000637734 379 ntBASIC5.76□□□□□ -1.49
HOXD4P09016 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.76□□□□□ -1.49
HOXD4P09016 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC5.76□□□□□ -1.49
HOXD4P09016 DCSTAMP-201ENST00000297581 1953 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HOXD4P09016 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
HOXD4P09016 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.76□□□□□ -1.49
HOXD4P09016 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
HOXD4P09016 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
HOXD4P09016 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HOXD4P09016 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
HOXD4P09016 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
HOXD4P09016 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
HOXD4P09016 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
HOXD4P09016 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
HOXD4P09016 SLF1-201ENST00000265140 5905 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
HOXD4P09016 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
HOXD4P09016 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
HOXD4P09016 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
HOXD4P09016 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
HOXD4P09016 HSPD1P9-201ENST00000420325 1636 ntBASIC5.75□□□□□ -1.49
HOXD4P09016 AP002370.1-201ENST00000528055 1602 ntBASIC5.75□□□□□ -1.49
HOXD4P09016 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
HOXD4P09016 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC5.75□□□□□ -1.49
HOXD4P09016 LCN1P2-201ENST00000372030 223 ntBASIC5.75□□□□□ -1.49
HOXD4P09016 ZCCHC6-203ENST00000375948 958 ntTSL 2 BASIC5.75□□□□□ -1.49
HOXD4P09016 AC004386.1-201ENST00000393214 761 ntBASIC5.75□□□□□ -1.49
HOXD4P09016 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC5.75□□□□□ -1.49
HOXD4P09016 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC5.75□□□□□ -1.49
HOXD4P09016 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC5.75□□□□□ -1.49
HOXD4P09016 AC011753.2-201ENST00000425576 610 ntTSL 5 BASIC5.75□□□□□ -1.49
HOXD4P09016 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
HOXD4P09016 AC010240.2-201ENST00000445363 1205 ntBASIC5.75□□□□□ -1.49
HOXD4P09016 PPIAP20-201ENST00000449839 135 ntBASIC5.75□□□□□ -1.49
HOXD4P09016 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
HOXD4P09016 RPL12P31-201ENST00000478433 450 ntBASIC5.75□□□□□ -1.49
HOXD4P09016 PFN2-209ENST00000481275 560 ntTSL 4 BASIC5.75□□□□□ -1.49
HOXD4P09016 RN7SL104P-201ENST00000498686 293 ntBASIC5.75□□□□□ -1.49
HOXD4P09016 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms