Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC092724.1-201ENST00000624623 3397 ntBASIC5.55□□□□□ -1.52
LMX1BO60663 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
LMX1BO60663 AC073365.1-203ENST00000641055 1992 ntBASIC5.55□□□□□ -1.52
LMX1BO60663 GIF-201ENST00000257248 1518 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
LMX1BO60663 CD53-201ENST00000271324 1505 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
LMX1BO60663 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
LMX1BO60663 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC5.55□□□□□ -1.52
LMX1BO60663 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC5.55□□□□□ -1.52
LMX1BO60663 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
LMX1BO60663 MRPS27-201ENST00000261413 2785 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
LMX1BO60663 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
LMX1BO60663 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
LMX1BO60663 LCN1P2-201ENST00000372030 223 ntBASIC5.55□□□□□ -1.52
LMX1BO60663 AL360271.1-201ENST00000395679 510 ntBASIC5.55□□□□□ -1.52
LMX1BO60663 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC5.55□□□□□ -1.52
LMX1BO60663 UBE2V1P14-201ENST00000415815 558 ntBASIC5.55□□□□□ -1.52
LMX1BO60663 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC5.55□□□□□ -1.52
LMX1BO60663 RPS17P17-201ENST00000419392 409 ntBASIC5.55□□□□□ -1.52
LMX1BO60663 AL035401.1-201ENST00000420572 871 ntTSL 3 BASIC5.55□□□□□ -1.52
LMX1BO60663 SETP10-201ENST00000424368 814 ntBASIC5.55□□□□□ -1.52
LMX1BO60663 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC5.55□□□□□ -1.52
LMX1BO60663 AC099782.1-201ENST00000425889 474 ntBASIC5.55□□□□□ -1.52
LMX1BO60663 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
LMX1BO60663 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC5.55□□□□□ -1.52
LMX1BO60663 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC5.55□□□□□ -1.52
LMX1BO60663 AC069154.1-201ENST00000432914 542 ntBASIC5.55□□□□□ -1.52
LMX1BO60663 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC5.55□□□□□ -1.52
LMX1BO60663 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC5.55□□□□□ -1.52
LMX1BO60663 ARMC4P1-201ENST00000438905 707 ntBASIC5.55□□□□□ -1.52
LMX1BO60663 AC100823.1-201ENST00000442274 480 ntTSL 3 BASIC5.55□□□□□ -1.52
LMX1BO60663 VN1R96P-201ENST00000446052 858 ntBASIC5.55□□□□□ -1.52
LMX1BO60663 AC103563.5-201ENST00000455643 364 ntBASIC5.55□□□□□ -1.52
LMX1BO60663 RN7SL552P-201ENST00000462094 276 ntBASIC5.55□□□□□ -1.52
LMX1BO60663 NFU1-207ENST00000462320 558 ntTSL 4 BASIC5.55□□□□□ -1.52
LMX1BO60663 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC5.55□□□□□ -1.52
LMX1BO60663 RN7SL221P-201ENST00000466190 281 ntBASIC5.55□□□□□ -1.52
LMX1BO60663 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC5.55□□□□□ -1.52
LMX1BO60663 CBX1-205ENST00000495350 550 ntTSL 2 BASIC5.55□□□□□ -1.52
LMX1BO60663 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
LMX1BO60663 AC091874.2-201ENST00000505889 720 ntBASIC5.55□□□□□ -1.52
LMX1BO60663 HSD3BP3-201ENST00000514706 994 ntBASIC5.55□□□□□ -1.52
LMX1BO60663 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC5.55□□□□□ -1.52
LMX1BO60663 OR4A40P-201ENST00000533878 948 ntBASIC5.55□□□□□ -1.52
LMX1BO60663 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC5.55□□□□□ -1.52
LMX1BO60663 AC080011.1-201ENST00000552378 989 ntTSL 3 BASIC5.55□□□□□ -1.52
LMX1BO60663 AC023389.2-201ENST00000580031 955 ntBASIC5.55□□□□□ -1.52
LMX1BO60663 AC006305.2-201ENST00000589617 552 ntTSL 4 BASIC5.55□□□□□ -1.52
LMX1BO60663 APOC2-205ENST00000592257 444 ntTSL 3 BASIC5.55□□□□□ -1.52
LMX1BO60663 AC104820.1-201ENST00000624183 307 ntBASIC5.55□□□□□ -1.52
LMX1BO60663 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC5.55□□□□□ -1.52
LMX1BO60663 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
LMX1BO60663 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
LMX1BO60663 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
LMX1BO60663 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
LMX1BO60663 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC5.55□□□□□ -1.52
LMX1BO60663 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
LMX1BO60663 EEF1A1P9-201ENST00000514975 1383 ntBASIC5.55□□□□□ -1.52
LMX1BO60663 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
LMX1BO60663 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
LMX1BO60663 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
LMX1BO60663 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
LMX1BO60663 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
LMX1BO60663 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
LMX1BO60663 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
LMX1BO60663 ENTPD1-201ENST00000371205 2035 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
LMX1BO60663 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC5.54□□□□□ -1.52
LMX1BO60663 RNU4-64P-201ENST00000410795 131 ntBASIC5.54□□□□□ -1.52
LMX1BO60663 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC5.54□□□□□ -1.52
LMX1BO60663 OSBPL10-AS1-203ENST00000428872 538 ntTSL 3 BASIC5.54□□□□□ -1.52
LMX1BO60663 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC5.54□□□□□ -1.52
LMX1BO60663 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC5.54□□□□□ -1.52
LMX1BO60663 AC114814.1-201ENST00000444926 691 ntTSL 3 BASIC5.54□□□□□ -1.52
LMX1BO60663 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC5.54□□□□□ -1.52
LMX1BO60663 FCF1P7-201ENST00000451185 558 ntBASIC5.54□□□□□ -1.52
LMX1BO60663 OR2AF1P-201ENST00000454899 889 ntBASIC5.54□□□□□ -1.52
LMX1BO60663 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC5.54□□□□□ -1.52
LMX1BO60663 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC5.54□□□□□ -1.52
LMX1BO60663 RN7SL39P-201ENST00000462264 297 ntBASIC5.54□□□□□ -1.52
LMX1BO60663 NDUFA5P5-201ENST00000468361 342 ntBASIC5.54□□□□□ -1.52
LMX1BO60663 RABGAP1L-214ENST00000478442 648 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
LMX1BO60663 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC5.54□□□□□ -1.52
LMX1BO60663 AC093870.1-201ENST00000506837 213 ntBASIC5.54□□□□□ -1.52
LMX1BO60663 COL6A4P2-205ENST00000509855 506 ntBASIC5.54□□□□□ -1.52
LMX1BO60663 IGKV1D-22-201ENST00000518953 324 ntBASIC5.54□□□□□ -1.52
LMX1BO60663 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC5.54□□□□□ -1.52
LMX1BO60663 AC135983.3-201ENST00000528049 1226 ntBASIC5.54□□□□□ -1.52
LMX1BO60663 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
LMX1BO60663 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC5.54□□□□□ -1.52
LMX1BO60663 LINC02457-201ENST00000552992 596 ntTSL 4 BASIC5.54□□□□□ -1.52
LMX1BO60663 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
LMX1BO60663 OR4H6P-201ENST00000563771 921 ntBASIC5.54□□□□□ -1.52
LMX1BO60663 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC5.54□□□□□ -1.52
LMX1BO60663 AL078601.3-201ENST00000573303 535 ntBASIC5.54□□□□□ -1.52
LMX1BO60663 SYPL1P2-201ENST00000582878 727 ntBASIC5.54□□□□□ -1.52
LMX1BO60663 RN7SL475P-201ENST00000583379 298 ntBASIC5.54□□□□□ -1.52
LMX1BO60663 AC090616.1-201ENST00000583895 447 ntBASIC5.54□□□□□ -1.52
LMX1BO60663 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC5.54□□□□□ -1.52
LMX1BO60663 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC5.54□□□□□ -1.52
LMX1BO60663 BNIP3P39-201ENST00000601077 554 ntBASIC5.54□□□□□ -1.52
LMX1BO60663 LINC01435-212ENST00000601212 742 ntTSL 5 BASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms