Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 UPK3BP1-201ENST00000428678 509 ntBASIC19.02■□□□□ 0.64
PCDHGA1Q9Y5H4 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC19.02■□□□□ 0.64
PCDHGA1Q9Y5H4 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDHGA1Q9Y5H4 AP000692.2-201ENST00000608391 879 ntBASIC19.02■□□□□ 0.64
PCDHGA1Q9Y5H4 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
PCDHGA1Q9Y5H4 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PCDHGA1Q9Y5H4 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.02■□□□□ 0.64
PCDHGA1Q9Y5H4 AC121338.2-201ENST00000622535 1744 ntBASIC19.02■□□□□ 0.63
PCDHGA1Q9Y5H4 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
PCDHGA1Q9Y5H4 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
PCDHGA1Q9Y5H4 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
PCDHGA1Q9Y5H4 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PCDHGA1Q9Y5H4 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
PCDHGA1Q9Y5H4 KRT18P16-201ENST00000510337 1294 ntBASIC19.01■□□□□ 0.63
PCDHGA1Q9Y5H4 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PCDHGA1Q9Y5H4 GPX4-207ENST00000589115 812 ntTSL 2 BASIC19.01■□□□□ 0.63
PCDHGA1Q9Y5H4 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC19.01■□□□□ 0.63
PCDHGA1Q9Y5H4 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
PCDHGA1Q9Y5H4 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
PCDHGA1Q9Y5H4 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PCDHGA1Q9Y5H4 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PCDHGA1Q9Y5H4 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PCDHGA1Q9Y5H4 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.01■□□□□ 0.63
PCDHGA1Q9Y5H4 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PCDHGA1Q9Y5H4 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
PCDHGA1Q9Y5H4 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.01■□□□□ 0.63
PCDHGA1Q9Y5H4 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PCDHGA1Q9Y5H4 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19■□□□□ 0.63
PCDHGA1Q9Y5H4 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19■□□□□ 0.63
PCDHGA1Q9Y5H4 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
PCDHGA1Q9Y5H4 COPE-203ENST00000351079 907 ntTSL 2 BASIC19■□□□□ 0.63
PCDHGA1Q9Y5H4 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
PCDHGA1Q9Y5H4 TUBB8P6-201ENST00000436895 1288 ntBASIC19■□□□□ 0.63
PCDHGA1Q9Y5H4 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19■□□□□ 0.63
PCDHGA1Q9Y5H4 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC19■□□□□ 0.63
PCDHGA1Q9Y5H4 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC19■□□□□ 0.63
PCDHGA1Q9Y5H4 AC130371.2-201ENST00000619443 611 ntBASIC19■□□□□ 0.63
PCDHGA1Q9Y5H4 AL358472.4-201ENST00000633140 710 ntBASIC19■□□□□ 0.63
PCDHGA1Q9Y5H4 MED25-212ENST00000618715 1467 ntTSL 5 BASIC19■□□□□ 0.63
PCDHGA1Q9Y5H4 AC116351.2-201ENST00000606540 1585 ntBASIC19■□□□□ 0.63
PCDHGA1Q9Y5H4 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19■□□□□ 0.63
PCDHGA1Q9Y5H4 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PCDHGA1Q9Y5H4 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PCDHGA1Q9Y5H4 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PCDHGA1Q9Y5H4 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19■□□□□ 0.63
PCDHGA1Q9Y5H4 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19■□□□□ 0.63
PCDHGA1Q9Y5H4 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PCDHGA1Q9Y5H4 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
PCDHGA1Q9Y5H4 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PCDHGA1Q9Y5H4 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC18.99■□□□□ 0.63
PCDHGA1Q9Y5H4 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PCDHGA1Q9Y5H4 EFS-203ENST00000429593 2610 ntTSL 2 BASIC18.99■□□□□ 0.63
PCDHGA1Q9Y5H4 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
PCDHGA1Q9Y5H4 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
PCDHGA1Q9Y5H4 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PCDHGA1Q9Y5H4 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PCDHGA1Q9Y5H4 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PCDHGA1Q9Y5H4 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PCDHGA1Q9Y5H4 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
PCDHGA1Q9Y5H4 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PCDHGA1Q9Y5H4 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC18.99■□□□□ 0.63
PCDHGA1Q9Y5H4 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC18.99■□□□□ 0.63
PCDHGA1Q9Y5H4 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC18.99■□□□□ 0.63
PCDHGA1Q9Y5H4 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.99■□□□□ 0.63
PCDHGA1Q9Y5H4 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PCDHGA1Q9Y5H4 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC18.99■□□□□ 0.63
PCDHGA1Q9Y5H4 CYGB-204ENST00000589342 815 ntTSL 3 BASIC18.99■□□□□ 0.63
PCDHGA1Q9Y5H4 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC18.99■□□□□ 0.63
PCDHGA1Q9Y5H4 MYC-208ENST00000641036 567 ntBASIC18.99■□□□□ 0.63
PCDHGA1Q9Y5H4 AC116562.4-202ENST00000641738 218 ntBASIC18.99■□□□□ 0.63
PCDHGA1Q9Y5H4 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC18.99■□□□□ 0.63
PCDHGA1Q9Y5H4 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PCDHGA1Q9Y5H4 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.99■□□□□ 0.63
PCDHGA1Q9Y5H4 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC18.99■□□□□ 0.63
PCDHGA1Q9Y5H4 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PCDHGA1Q9Y5H4 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PCDHGA1Q9Y5H4 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PCDHGA1Q9Y5H4 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
PCDHGA1Q9Y5H4 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC18.98■□□□□ 0.63
PCDHGA1Q9Y5H4 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.98■□□□□ 0.63
PCDHGA1Q9Y5H4 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
PCDHGA1Q9Y5H4 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PCDHGA1Q9Y5H4 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PCDHGA1Q9Y5H4 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC18.98■□□□□ 0.63
PCDHGA1Q9Y5H4 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PCDHGA1Q9Y5H4 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PCDHGA1Q9Y5H4 RNF152P1-201ENST00000397754 604 ntBASIC18.98■□□□□ 0.63
PCDHGA1Q9Y5H4 AC117947.1-201ENST00000427448 529 ntBASIC18.98■□□□□ 0.63
PCDHGA1Q9Y5H4 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.98■□□□□ 0.63
PCDHGA1Q9Y5H4 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.98■□□□□ 0.63
PCDHGA1Q9Y5H4 SAPCD2P2-201ENST00000431719 1174 ntBASIC18.98■□□□□ 0.63
PCDHGA1Q9Y5H4 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC18.98■□□□□ 0.63
PCDHGA1Q9Y5H4 AC091390.4-202ENST00000476426 537 ntBASIC18.98■□□□□ 0.63
PCDHGA1Q9Y5H4 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC18.98■□□□□ 0.63
PCDHGA1Q9Y5H4 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC18.98■□□□□ 0.63
PCDHGA1Q9Y5H4 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC18.98■□□□□ 0.63
PCDHGA1Q9Y5H4 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.98■□□□□ 0.63
PCDHGA1Q9Y5H4 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.98■□□□□ 0.63
PCDHGA1Q9Y5H4 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PCDHGA1Q9Y5H4 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms