Protein–RNA interactions for Protein: Q9UKN8

GTF3C4, General transcription factor 3C polypeptide 4, humanhuman

Predictions only

Length 822 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C4Q9UKN8 AL691432.2-201ENST00000607222 2038 ntBASIC21.28■■□□□ 1
GTF3C4Q9UKN8 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
GTF3C4Q9UKN8 PEX7-202ENST00000367756 680 ntTSL 3 BASIC21.28■■□□□ 1
GTF3C4Q9UKN8 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
GTF3C4Q9UKN8 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC21.28■■□□□ 1
GTF3C4Q9UKN8 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC21.28■■□□□ 1
GTF3C4Q9UKN8 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC21.28■■□□□ 1
GTF3C4Q9UKN8 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC21.28■■□□□ 1
GTF3C4Q9UKN8 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC21.28■■□□□ 1
GTF3C4Q9UKN8 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
GTF3C4Q9UKN8 LBX2-AS1-202ENST00000603175 2083 ntBASIC21.28■■□□□ 1
GTF3C4Q9UKN8 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
GTF3C4Q9UKN8 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC21.28■■□□□ 1
GTF3C4Q9UKN8 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC21.28■■□□□ 1
GTF3C4Q9UKN8 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
GTF3C4Q9UKN8 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
GTF3C4Q9UKN8 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC21.28■■□□□ 1
GTF3C4Q9UKN8 CD37-204ENST00000535669 1674 ntTSL 2 BASIC21.28■■□□□ 1
GTF3C4Q9UKN8 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC21.28■■□□□ 1
GTF3C4Q9UKN8 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
GTF3C4Q9UKN8 AC124283.5-201ENST00000624661 1809 ntBASIC21.27■■□□□ 1
GTF3C4Q9UKN8 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC21.27■■□□□ 1
GTF3C4Q9UKN8 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
GTF3C4Q9UKN8 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC21.27■■□□□ 1
GTF3C4Q9UKN8 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC21.27■■□□□ 1
GTF3C4Q9UKN8 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC21.27■■□□□ 1
GTF3C4Q9UKN8 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC21.27■■□□□ 1
GTF3C4Q9UKN8 MTDHP1-201ENST00000605323 784 ntBASIC21.27■■□□□ 1
GTF3C4Q9UKN8 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC21.27■■□□□ 1
GTF3C4Q9UKN8 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC21.27■■□□□ 1
GTF3C4Q9UKN8 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC21.27■■□□□ 1
GTF3C4Q9UKN8 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC21.27■■□□□ 1
GTF3C4Q9UKN8 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC21.27■■□□□ 1
GTF3C4Q9UKN8 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
GTF3C4Q9UKN8 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
GTF3C4Q9UKN8 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
GTF3C4Q9UKN8 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.27■■□□□ 1
GTF3C4Q9UKN8 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC21.27■□□□□ 0.99
GTF3C4Q9UKN8 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
GTF3C4Q9UKN8 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC21.27■□□□□ 0.99
GTF3C4Q9UKN8 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC21.27■□□□□ 0.99
GTF3C4Q9UKN8 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC21.27■□□□□ 0.99
GTF3C4Q9UKN8 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
GTF3C4Q9UKN8 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC21.26■□□□□ 0.99
GTF3C4Q9UKN8 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
GTF3C4Q9UKN8 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
GTF3C4Q9UKN8 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
GTF3C4Q9UKN8 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
GTF3C4Q9UKN8 HLA-G-202ENST00000376815 851 ntBASIC21.26■□□□□ 0.99
GTF3C4Q9UKN8 HLA-G-203ENST00000376818 1127 ntBASIC21.26■□□□□ 0.99
GTF3C4Q9UKN8 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC21.26■□□□□ 0.99
GTF3C4Q9UKN8 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC21.26■□□□□ 0.99
GTF3C4Q9UKN8 KRT8P20-201ENST00000423953 1409 ntBASIC21.26■□□□□ 0.99
GTF3C4Q9UKN8 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
GTF3C4Q9UKN8 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
GTF3C4Q9UKN8 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC21.26■□□□□ 0.99
GTF3C4Q9UKN8 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
GTF3C4Q9UKN8 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC21.26■□□□□ 0.99
GTF3C4Q9UKN8 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
GTF3C4Q9UKN8 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
GTF3C4Q9UKN8 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
GTF3C4Q9UKN8 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
GTF3C4Q9UKN8 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
GTF3C4Q9UKN8 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC21.25■□□□□ 0.99
GTF3C4Q9UKN8 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC21.25■□□□□ 0.99
GTF3C4Q9UKN8 KRT8P17-201ENST00000453110 1448 ntBASIC21.25■□□□□ 0.99
GTF3C4Q9UKN8 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
GTF3C4Q9UKN8 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
GTF3C4Q9UKN8 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC21.25■□□□□ 0.99
GTF3C4Q9UKN8 RNF121-214ENST00000533380 870 ntTSL 3 BASIC21.25■□□□□ 0.99
GTF3C4Q9UKN8 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC21.25■□□□□ 0.99
GTF3C4Q9UKN8 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
GTF3C4Q9UKN8 AL031963.3-201ENST00000606441 850 ntBASIC21.25■□□□□ 0.99
GTF3C4Q9UKN8 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
GTF3C4Q9UKN8 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC21.25■□□□□ 0.99
GTF3C4Q9UKN8 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
GTF3C4Q9UKN8 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
GTF3C4Q9UKN8 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
GTF3C4Q9UKN8 AC125437.2-201ENST00000625180 2167 ntBASIC21.24■□□□□ 0.99
GTF3C4Q9UKN8 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
GTF3C4Q9UKN8 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
GTF3C4Q9UKN8 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
GTF3C4Q9UKN8 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
GTF3C4Q9UKN8 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
GTF3C4Q9UKN8 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
GTF3C4Q9UKN8 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
GTF3C4Q9UKN8 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
GTF3C4Q9UKN8 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
GTF3C4Q9UKN8 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
GTF3C4Q9UKN8 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC21.24■□□□□ 0.99
GTF3C4Q9UKN8 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC21.24■□□□□ 0.99
GTF3C4Q9UKN8 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC21.24■□□□□ 0.99
GTF3C4Q9UKN8 FAM197Y4-202ENST00000622692 608 ntBASIC21.24■□□□□ 0.99
GTF3C4Q9UKN8 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC21.24■□□□□ 0.99
GTF3C4Q9UKN8 AL023875.1-201ENST00000640777 796 ntBASIC21.24■□□□□ 0.99
GTF3C4Q9UKN8 TMEM179-206ENST00000616017 1645 ntBASIC21.24■□□□□ 0.99
GTF3C4Q9UKN8 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC21.24■□□□□ 0.99
GTF3C4Q9UKN8 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
GTF3C4Q9UKN8 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
GTF3C4Q9UKN8 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms