Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
MKS1Q9NXB0 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
MKS1Q9NXB0 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.5■□□□□ 0.71
MKS1Q9NXB0 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
MKS1Q9NXB0 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.5■□□□□ 0.71
MKS1Q9NXB0 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.5■□□□□ 0.71
MKS1Q9NXB0 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
MKS1Q9NXB0 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
MKS1Q9NXB0 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
MKS1Q9NXB0 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.5■□□□□ 0.71
MKS1Q9NXB0 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
MKS1Q9NXB0 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
MKS1Q9NXB0 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
MKS1Q9NXB0 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
MKS1Q9NXB0 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
MKS1Q9NXB0 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
MKS1Q9NXB0 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.5■□□□□ 0.71
MKS1Q9NXB0 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
MKS1Q9NXB0 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
MKS1Q9NXB0 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
MKS1Q9NXB0 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
MKS1Q9NXB0 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
MKS1Q9NXB0 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
MKS1Q9NXB0 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
MKS1Q9NXB0 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
MKS1Q9NXB0 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.49■□□□□ 0.71
MKS1Q9NXB0 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.49■□□□□ 0.71
MKS1Q9NXB0 KRT18P68-201ENST00000392293 1000 ntBASIC19.49■□□□□ 0.71
MKS1Q9NXB0 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.49■□□□□ 0.71
MKS1Q9NXB0 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.49■□□□□ 0.71
MKS1Q9NXB0 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
MKS1Q9NXB0 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
MKS1Q9NXB0 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
MKS1Q9NXB0 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
MKS1Q9NXB0 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
MKS1Q9NXB0 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
MKS1Q9NXB0 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
MKS1Q9NXB0 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
MKS1Q9NXB0 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
MKS1Q9NXB0 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.49■□□□□ 0.71
MKS1Q9NXB0 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC19.49■□□□□ 0.71
MKS1Q9NXB0 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
MKS1Q9NXB0 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
MKS1Q9NXB0 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MKS1Q9NXB0 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.48■□□□□ 0.71
MKS1Q9NXB0 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
MKS1Q9NXB0 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MKS1Q9NXB0 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MKS1Q9NXB0 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
MKS1Q9NXB0 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
MKS1Q9NXB0 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.48■□□□□ 0.71
MKS1Q9NXB0 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.48■□□□□ 0.71
MKS1Q9NXB0 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
MKS1Q9NXB0 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
MKS1Q9NXB0 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
MKS1Q9NXB0 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
MKS1Q9NXB0 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
MKS1Q9NXB0 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MKS1Q9NXB0 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MKS1Q9NXB0 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
MKS1Q9NXB0 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
MKS1Q9NXB0 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC19.48■□□□□ 0.71
MKS1Q9NXB0 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.48■□□□□ 0.71
MKS1Q9NXB0 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MKS1Q9NXB0 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MKS1Q9NXB0 AL161938.1-201ENST00000569833 2180 ntBASIC19.47■□□□□ 0.71
MKS1Q9NXB0 NEFHP1-201ENST00000412845 2629 ntBASIC19.47■□□□□ 0.71
MKS1Q9NXB0 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC19.47■□□□□ 0.71
MKS1Q9NXB0 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MKS1Q9NXB0 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MKS1Q9NXB0 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.47■□□□□ 0.71
MKS1Q9NXB0 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MKS1Q9NXB0 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
MKS1Q9NXB0 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.47■□□□□ 0.71
MKS1Q9NXB0 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC19.47■□□□□ 0.71
MKS1Q9NXB0 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.47■□□□□ 0.71
MKS1Q9NXB0 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
MKS1Q9NXB0 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.47■□□□□ 0.71
MKS1Q9NXB0 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
MKS1Q9NXB0 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC19.47■□□□□ 0.71
MKS1Q9NXB0 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
MKS1Q9NXB0 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.47■□□□□ 0.71
MKS1Q9NXB0 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
MKS1Q9NXB0 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MKS1Q9NXB0 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MKS1Q9NXB0 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
MKS1Q9NXB0 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
MKS1Q9NXB0 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.46■□□□□ 0.71
MKS1Q9NXB0 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.46■□□□□ 0.71
MKS1Q9NXB0 AC141586.3-201ENST00000562166 1838 ntBASIC19.46■□□□□ 0.71
MKS1Q9NXB0 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MKS1Q9NXB0 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
MKS1Q9NXB0 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.46■□□□□ 0.71
MKS1Q9NXB0 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
MKS1Q9NXB0 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
MKS1Q9NXB0 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
MKS1Q9NXB0 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MKS1Q9NXB0 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
MKS1Q9NXB0 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.46■□□□□ 0.71
MKS1Q9NXB0 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms