Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
SHANK3Q9BYB0 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC25.75■■□□□ 1.71
SHANK3Q9BYB0 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC25.75■■□□□ 1.71
SHANK3Q9BYB0 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC25.75■■□□□ 1.71
SHANK3Q9BYB0 BID-212ENST00000614949 1988 ntTSL 5 BASIC25.75■■□□□ 1.71
SHANK3Q9BYB0 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
SHANK3Q9BYB0 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
SHANK3Q9BYB0 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
SHANK3Q9BYB0 AP000692.2-201ENST00000608391 879 ntBASIC25.75■■□□□ 1.71
SHANK3Q9BYB0 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC25.75■■□□□ 1.71
SHANK3Q9BYB0 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC25.75■■□□□ 1.71
SHANK3Q9BYB0 FP700111.2-201ENST00000619190 1892 ntBASIC25.75■■□□□ 1.71
SHANK3Q9BYB0 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC25.75■■□□□ 1.71
SHANK3Q9BYB0 AC006128.1-201ENST00000624704 1661 ntBASIC25.75■■□□□ 1.71
SHANK3Q9BYB0 FAM207BP-201ENST00000447172 505 ntBASIC25.74■■□□□ 1.71
SHANK3Q9BYB0 SLC25A1P4-201ENST00000567977 778 ntBASIC25.74■■□□□ 1.71
SHANK3Q9BYB0 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC25.74■■□□□ 1.71
SHANK3Q9BYB0 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC25.74■■□□□ 1.71
SHANK3Q9BYB0 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC25.74■■□□□ 1.71
SHANK3Q9BYB0 AC004951.3-201ENST00000418645 1148 ntBASIC25.74■■□□□ 1.71
SHANK3Q9BYB0 SAPCD2P2-201ENST00000431719 1174 ntBASIC25.74■■□□□ 1.71
SHANK3Q9BYB0 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC25.74■■□□□ 1.71
SHANK3Q9BYB0 AL359075.1-203ENST00000462729 1002 ntBASIC25.74■■□□□ 1.71
SHANK3Q9BYB0 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC25.74■■□□□ 1.71
SHANK3Q9BYB0 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC25.74■■□□□ 1.71
SHANK3Q9BYB0 WWC2-AS2-201ENST00000578387 2183 ntBASIC25.73■■□□□ 1.71
SHANK3Q9BYB0 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
SHANK3Q9BYB0 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC25.73■■□□□ 1.71
SHANK3Q9BYB0 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
SHANK3Q9BYB0 DUSP5P1-201ENST00000441325 1139 ntBASIC25.73■■□□□ 1.71
SHANK3Q9BYB0 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
SHANK3Q9BYB0 AC008040.2-201ENST00000461049 708 ntBASIC25.73■■□□□ 1.71
SHANK3Q9BYB0 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC25.73■■□□□ 1.71
SHANK3Q9BYB0 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC25.73■■□□□ 1.71
SHANK3Q9BYB0 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
SHANK3Q9BYB0 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC25.73■■□□□ 1.71
SHANK3Q9BYB0 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
SHANK3Q9BYB0 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
SHANK3Q9BYB0 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC25.72■■□□□ 1.71
SHANK3Q9BYB0 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC25.72■■□□□ 1.71
SHANK3Q9BYB0 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC25.72■■□□□ 1.71
SHANK3Q9BYB0 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC25.72■■□□□ 1.71
SHANK3Q9BYB0 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
SHANK3Q9BYB0 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
SHANK3Q9BYB0 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC25.71■■□□□ 1.71
SHANK3Q9BYB0 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC25.71■■□□□ 1.71
SHANK3Q9BYB0 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC25.71■■□□□ 1.71
SHANK3Q9BYB0 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC25.71■■□□□ 1.71
SHANK3Q9BYB0 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC25.71■■□□□ 1.71
SHANK3Q9BYB0 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
SHANK3Q9BYB0 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
SHANK3Q9BYB0 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
SHANK3Q9BYB0 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
SHANK3Q9BYB0 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC25.71■■□□□ 1.71
SHANK3Q9BYB0 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC25.71■■□□□ 1.71
SHANK3Q9BYB0 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC25.7■■□□□ 1.71
SHANK3Q9BYB0 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
SHANK3Q9BYB0 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
SHANK3Q9BYB0 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
SHANK3Q9BYB0 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC25.7■■□□□ 1.7
SHANK3Q9BYB0 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
SHANK3Q9BYB0 GLRB-205ENST00000512619 728 ntTSL 3 BASIC25.7■■□□□ 1.7
SHANK3Q9BYB0 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC25.7■■□□□ 1.7
SHANK3Q9BYB0 EP400NL-214ENST00000641289 2402 ntBASIC25.7■■□□□ 1.7
SHANK3Q9BYB0 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
SHANK3Q9BYB0 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC25.7■■□□□ 1.7
SHANK3Q9BYB0 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
SHANK3Q9BYB0 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.7
SHANK3Q9BYB0 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
SHANK3Q9BYB0 TMEM179-206ENST00000616017 1645 ntBASIC25.7■■□□□ 1.7
SHANK3Q9BYB0 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC25.7■■□□□ 1.7
SHANK3Q9BYB0 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC25.69■■□□□ 1.7
SHANK3Q9BYB0 GXYLT1P6-201ENST00000456472 1187 ntBASIC25.69■■□□□ 1.7
SHANK3Q9BYB0 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC25.69■■□□□ 1.7
SHANK3Q9BYB0 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC25.69■■□□□ 1.7
SHANK3Q9BYB0 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SHANK3Q9BYB0 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
SHANK3Q9BYB0 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC25.69■■□□□ 1.7
SHANK3Q9BYB0 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC25.69■■□□□ 1.7
SHANK3Q9BYB0 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC25.69■■□□□ 1.7
SHANK3Q9BYB0 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC25.68■■□□□ 1.7
SHANK3Q9BYB0 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC25.68■■□□□ 1.7
SHANK3Q9BYB0 CD70-202ENST00000423145 881 ntTSL 2 BASIC25.68■■□□□ 1.7
SHANK3Q9BYB0 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
SHANK3Q9BYB0 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC25.68■■□□□ 1.7
SHANK3Q9BYB0 CYGB-204ENST00000589342 815 ntTSL 3 BASIC25.68■■□□□ 1.7
SHANK3Q9BYB0 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC25.68■■□□□ 1.7
SHANK3Q9BYB0 AC010653.2-201ENST00000623505 997 ntBASIC25.68■■□□□ 1.7
SHANK3Q9BYB0 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC25.68■■□□□ 1.7
SHANK3Q9BYB0 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC25.68■■□□□ 1.7
SHANK3Q9BYB0 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
SHANK3Q9BYB0 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
SHANK3Q9BYB0 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC25.68■■□□□ 1.7
SHANK3Q9BYB0 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC25.68■■□□□ 1.7
SHANK3Q9BYB0 BET1L-202ENST00000332865 533 ntTSL 5 BASIC25.68■■□□□ 1.7
SHANK3Q9BYB0 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
SHANK3Q9BYB0 LINC01238-205ENST00000567549 1107 ntBASIC25.68■■□□□ 1.7
SHANK3Q9BYB0 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
SHANK3Q9BYB0 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC25.68■■□□□ 1.7
SHANK3Q9BYB0 AC116407.4-201ENST00000623319 1061 ntBASIC25.68■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms