Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLIP3Q96DZ5 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLIP3Q96DZ5 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CLIP3Q96DZ5 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
CLIP3Q96DZ5 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
CLIP3Q96DZ5 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.02■□□□□ 0.63
CLIP3Q96DZ5 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CLIP3Q96DZ5 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLIP3Q96DZ5 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.01■□□□□ 0.63
CLIP3Q96DZ5 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLIP3Q96DZ5 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLIP3Q96DZ5 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLIP3Q96DZ5 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.01■□□□□ 0.63
CLIP3Q96DZ5 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.01■□□□□ 0.63
CLIP3Q96DZ5 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
CLIP3Q96DZ5 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLIP3Q96DZ5 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLIP3Q96DZ5 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CLIP3Q96DZ5 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.01■□□□□ 0.63
CLIP3Q96DZ5 AC133681.1-201ENST00000465482 601 ntBASIC19.01■□□□□ 0.63
CLIP3Q96DZ5 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC19.01■□□□□ 0.63
CLIP3Q96DZ5 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
CLIP3Q96DZ5 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CLIP3Q96DZ5 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CLIP3Q96DZ5 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CLIP3Q96DZ5 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLIP3Q96DZ5 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLIP3Q96DZ5 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
CLIP3Q96DZ5 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
CLIP3Q96DZ5 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
CLIP3Q96DZ5 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLIP3Q96DZ5 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
CLIP3Q96DZ5 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
CLIP3Q96DZ5 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLIP3Q96DZ5 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
CLIP3Q96DZ5 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19■□□□□ 0.63
CLIP3Q96DZ5 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19■□□□□ 0.63
CLIP3Q96DZ5 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLIP3Q96DZ5 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC19■□□□□ 0.63
CLIP3Q96DZ5 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC19■□□□□ 0.63
CLIP3Q96DZ5 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19■□□□□ 0.63
CLIP3Q96DZ5 Z99916.2-201ENST00000604037 246 ntBASIC19■□□□□ 0.63
CLIP3Q96DZ5 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLIP3Q96DZ5 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19■□□□□ 0.63
CLIP3Q96DZ5 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19■□□□□ 0.63
CLIP3Q96DZ5 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLIP3Q96DZ5 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19■□□□□ 0.63
CLIP3Q96DZ5 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CLIP3Q96DZ5 AC124283.5-201ENST00000624661 1809 ntBASIC19■□□□□ 0.63
CLIP3Q96DZ5 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLIP3Q96DZ5 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19■□□□□ 0.63
CLIP3Q96DZ5 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19■□□□□ 0.63
CLIP3Q96DZ5 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CLIP3Q96DZ5 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19■□□□□ 0.63
CLIP3Q96DZ5 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CLIP3Q96DZ5 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CLIP3Q96DZ5 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CLIP3Q96DZ5 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CLIP3Q96DZ5 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.99■□□□□ 0.63
CLIP3Q96DZ5 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CLIP3Q96DZ5 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CLIP3Q96DZ5 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.99■□□□□ 0.63
CLIP3Q96DZ5 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.99■□□□□ 0.63
CLIP3Q96DZ5 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.99■□□□□ 0.63
CLIP3Q96DZ5 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.99■□□□□ 0.63
CLIP3Q96DZ5 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLIP3Q96DZ5 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLIP3Q96DZ5 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
CLIP3Q96DZ5 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
CLIP3Q96DZ5 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.99■□□□□ 0.63
CLIP3Q96DZ5 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.99■□□□□ 0.63
CLIP3Q96DZ5 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC18.99■□□□□ 0.63
CLIP3Q96DZ5 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
CLIP3Q96DZ5 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC18.98■□□□□ 0.63
CLIP3Q96DZ5 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLIP3Q96DZ5 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLIP3Q96DZ5 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLIP3Q96DZ5 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLIP3Q96DZ5 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.98■□□□□ 0.63
CLIP3Q96DZ5 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
CLIP3Q96DZ5 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLIP3Q96DZ5 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CLIP3Q96DZ5 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CLIP3Q96DZ5 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
CLIP3Q96DZ5 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLIP3Q96DZ5 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
CLIP3Q96DZ5 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC18.98■□□□□ 0.63
CLIP3Q96DZ5 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.98■□□□□ 0.63
CLIP3Q96DZ5 MIR4497-201ENST00000583208 89 ntBASIC18.98■□□□□ 0.63
CLIP3Q96DZ5 AL121829.2-201ENST00000620908 328 ntBASIC18.98■□□□□ 0.63
CLIP3Q96DZ5 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.98■□□□□ 0.63
CLIP3Q96DZ5 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLIP3Q96DZ5 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.98■□□□□ 0.63
CLIP3Q96DZ5 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLIP3Q96DZ5 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CLIP3Q96DZ5 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.98■□□□□ 0.63
CLIP3Q96DZ5 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLIP3Q96DZ5 KRT8P20-201ENST00000423953 1409 ntBASIC18.98■□□□□ 0.63
CLIP3Q96DZ5 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLIP3Q96DZ5 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms