Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SKA1Q96BD8 SLC29A4P2-201ENST00000504749 1089 ntBASIC20.24■□□□□ 0.83
SKA1Q96BD8 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC20.24■□□□□ 0.83
SKA1Q96BD8 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SKA1Q96BD8 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SKA1Q96BD8 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.24■□□□□ 0.83
SKA1Q96BD8 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SKA1Q96BD8 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
SKA1Q96BD8 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SKA1Q96BD8 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.23■□□□□ 0.83
SKA1Q96BD8 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC20.23■□□□□ 0.83
SKA1Q96BD8 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
SKA1Q96BD8 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SKA1Q96BD8 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SKA1Q96BD8 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SKA1Q96BD8 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
SKA1Q96BD8 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SKA1Q96BD8 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.23■□□□□ 0.83
SKA1Q96BD8 AL390719.1-204ENST00000412397 1219 ntBASIC20.23■□□□□ 0.83
SKA1Q96BD8 ABHD17AP6-201ENST00000458502 1044 ntBASIC20.23■□□□□ 0.83
SKA1Q96BD8 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SKA1Q96BD8 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
SKA1Q96BD8 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.23■□□□□ 0.83
SKA1Q96BD8 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC20.23■□□□□ 0.83
SKA1Q96BD8 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.23■□□□□ 0.83
SKA1Q96BD8 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SKA1Q96BD8 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC20.23■□□□□ 0.83
SKA1Q96BD8 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SKA1Q96BD8 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SKA1Q96BD8 AC116562.4-201ENST00000641316 2276 ntBASIC20.23■□□□□ 0.83
SKA1Q96BD8 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.23■□□□□ 0.83
SKA1Q96BD8 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
SKA1Q96BD8 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
SKA1Q96BD8 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SKA1Q96BD8 TCF3P1-201ENST00000423021 1937 ntBASIC20.22■□□□□ 0.83
SKA1Q96BD8 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SKA1Q96BD8 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.22■□□□□ 0.83
SKA1Q96BD8 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SKA1Q96BD8 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
SKA1Q96BD8 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
SKA1Q96BD8 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC20.22■□□□□ 0.83
SKA1Q96BD8 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
SKA1Q96BD8 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.22■□□□□ 0.83
SKA1Q96BD8 AC098818.2-201ENST00000564925 2320 ntBASIC20.22■□□□□ 0.83
SKA1Q96BD8 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
SKA1Q96BD8 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SKA1Q96BD8 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.22■□□□□ 0.83
SKA1Q96BD8 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.22■□□□□ 0.83
SKA1Q96BD8 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SKA1Q96BD8 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SKA1Q96BD8 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.22■□□□□ 0.83
SKA1Q96BD8 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SKA1Q96BD8 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SKA1Q96BD8 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
SKA1Q96BD8 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SKA1Q96BD8 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.21■□□□□ 0.83
SKA1Q96BD8 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.21■□□□□ 0.83
SKA1Q96BD8 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC20.21■□□□□ 0.83
SKA1Q96BD8 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC20.21■□□□□ 0.83
SKA1Q96BD8 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SKA1Q96BD8 MIR4497-201ENST00000583208 89 ntBASIC20.21■□□□□ 0.83
SKA1Q96BD8 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.21■□□□□ 0.83
SKA1Q96BD8 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.21■□□□□ 0.83
SKA1Q96BD8 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20.21■□□□□ 0.83
SKA1Q96BD8 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.21■□□□□ 0.83
SKA1Q96BD8 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.21■□□□□ 0.83
SKA1Q96BD8 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SKA1Q96BD8 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.21■□□□□ 0.83
SKA1Q96BD8 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SKA1Q96BD8 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SKA1Q96BD8 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SKA1Q96BD8 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
SKA1Q96BD8 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.21■□□□□ 0.83
SKA1Q96BD8 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
SKA1Q96BD8 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
SKA1Q96BD8 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
SKA1Q96BD8 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SKA1Q96BD8 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SKA1Q96BD8 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.2■□□□□ 0.83
SKA1Q96BD8 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SKA1Q96BD8 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SKA1Q96BD8 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.2■□□□□ 0.82
SKA1Q96BD8 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SKA1Q96BD8 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
SKA1Q96BD8 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SKA1Q96BD8 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SKA1Q96BD8 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SKA1Q96BD8 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC20.2■□□□□ 0.82
SKA1Q96BD8 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
SKA1Q96BD8 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
SKA1Q96BD8 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.2■□□□□ 0.82
SKA1Q96BD8 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SKA1Q96BD8 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.2■□□□□ 0.82
SKA1Q96BD8 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SKA1Q96BD8 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SKA1Q96BD8 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SKA1Q96BD8 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.2■□□□□ 0.82
SKA1Q96BD8 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC20.2■□□□□ 0.82
SKA1Q96BD8 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SKA1Q96BD8 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms