Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HMGB4Q8WW32 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HMGB4Q8WW32 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.85■□□□□ 0.77
HMGB4Q8WW32 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.85■□□□□ 0.77
HMGB4Q8WW32 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
HMGB4Q8WW32 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC19.85■□□□□ 0.77
HMGB4Q8WW32 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC19.85■□□□□ 0.77
HMGB4Q8WW32 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.85■□□□□ 0.77
HMGB4Q8WW32 CLN6-221ENST00000637494 765 ntTSL 5 BASIC19.85■□□□□ 0.77
HMGB4Q8WW32 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HMGB4Q8WW32 LINC00565-201ENST00000562710 2331 ntBASIC19.85■□□□□ 0.77
HMGB4Q8WW32 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HMGB4Q8WW32 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
HMGB4Q8WW32 AC006128.1-201ENST00000624704 1661 ntBASIC19.84■□□□□ 0.77
HMGB4Q8WW32 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.84■□□□□ 0.77
HMGB4Q8WW32 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HMGB4Q8WW32 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HMGB4Q8WW32 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HMGB4Q8WW32 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HMGB4Q8WW32 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
HMGB4Q8WW32 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
HMGB4Q8WW32 MESTP1-201ENST00000404287 994 ntBASIC19.84■□□□□ 0.77
HMGB4Q8WW32 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC19.84■□□□□ 0.77
HMGB4Q8WW32 YBX1P10-201ENST00000444752 975 ntBASIC19.84■□□□□ 0.77
HMGB4Q8WW32 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HMGB4Q8WW32 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC19.84■□□□□ 0.77
HMGB4Q8WW32 NME3-204ENST00000563498 920 ntTSL 2 BASIC19.84■□□□□ 0.77
HMGB4Q8WW32 C2orf69P3-201ENST00000565542 1120 ntBASIC19.84■□□□□ 0.77
HMGB4Q8WW32 AC026271.3-201ENST00000571884 352 ntBASIC19.84■□□□□ 0.77
HMGB4Q8WW32 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.84■□□□□ 0.77
HMGB4Q8WW32 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HMGB4Q8WW32 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
HMGB4Q8WW32 AC018553.1-201ENST00000616682 1458 ntBASIC19.84■□□□□ 0.77
HMGB4Q8WW32 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
HMGB4Q8WW32 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.84■□□□□ 0.77
HMGB4Q8WW32 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
HMGB4Q8WW32 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
HMGB4Q8WW32 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HMGB4Q8WW32 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
HMGB4Q8WW32 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HMGB4Q8WW32 TFP1-202ENST00000475455 1573 ntBASIC19.83■□□□□ 0.77
HMGB4Q8WW32 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19.83■□□□□ 0.77
HMGB4Q8WW32 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HMGB4Q8WW32 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
HMGB4Q8WW32 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.83■□□□□ 0.76
HMGB4Q8WW32 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
HMGB4Q8WW32 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HMGB4Q8WW32 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
HMGB4Q8WW32 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGB4Q8WW32 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
HMGB4Q8WW32 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
HMGB4Q8WW32 LIN28AP1-201ENST00000429574 405 ntBASIC19.82■□□□□ 0.76
HMGB4Q8WW32 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC19.82■□□□□ 0.76
HMGB4Q8WW32 TUBB8P6-201ENST00000436895 1288 ntBASIC19.82■□□□□ 0.76
HMGB4Q8WW32 B3GAT3P1-201ENST00000471720 806 ntBASIC19.82■□□□□ 0.76
HMGB4Q8WW32 RNF146-204ENST00000476956 884 ntTSL 2 BASIC19.82■□□□□ 0.76
HMGB4Q8WW32 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC19.82■□□□□ 0.76
HMGB4Q8WW32 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC19.82■□□□□ 0.76
HMGB4Q8WW32 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HMGB4Q8WW32 RBM42-202ENST00000586618 771 ntTSL 3 BASIC19.82■□□□□ 0.76
HMGB4Q8WW32 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
HMGB4Q8WW32 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HMGB4Q8WW32 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGB4Q8WW32 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGB4Q8WW32 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HMGB4Q8WW32 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.82■□□□□ 0.76
HMGB4Q8WW32 AC073508.3-201ENST00000619697 1419 ntBASIC19.82■□□□□ 0.76
HMGB4Q8WW32 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.82■□□□□ 0.76
HMGB4Q8WW32 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.82■□□□□ 0.76
HMGB4Q8WW32 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
HMGB4Q8WW32 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
HMGB4Q8WW32 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
HMGB4Q8WW32 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.81■□□□□ 0.76
HMGB4Q8WW32 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
HMGB4Q8WW32 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC19.81■□□□□ 0.76
HMGB4Q8WW32 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.81■□□□□ 0.76
HMGB4Q8WW32 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB4Q8WW32 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB4Q8WW32 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB4Q8WW32 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB4Q8WW32 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC19.81■□□□□ 0.76
HMGB4Q8WW32 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB4Q8WW32 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC19.81■□□□□ 0.76
HMGB4Q8WW32 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC19.81■□□□□ 0.76
HMGB4Q8WW32 ATP5G1P1-201ENST00000448724 379 ntBASIC19.81■□□□□ 0.76
HMGB4Q8WW32 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB4Q8WW32 AC011506.1-201ENST00000474329 610 ntBASIC19.81■□□□□ 0.76
HMGB4Q8WW32 TPM1-226ENST00000560959 925 ntTSL 2 BASIC19.81■□□□□ 0.76
HMGB4Q8WW32 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
HMGB4Q8WW32 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
HMGB4Q8WW32 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.81■□□□□ 0.76
HMGB4Q8WW32 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB4Q8WW32 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC19.81■□□□□ 0.76
HMGB4Q8WW32 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB4Q8WW32 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC19.81■□□□□ 0.76
HMGB4Q8WW32 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
HMGB4Q8WW32 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB4Q8WW32 AC007225.1-201ENST00000566331 1836 ntBASIC19.81■□□□□ 0.76
HMGB4Q8WW32 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.81■□□□□ 0.76
HMGB4Q8WW32 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms