Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
DEPDC4Q8N2C3 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
DEPDC4Q8N2C3 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
DEPDC4Q8N2C3 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
DEPDC4Q8N2C3 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
DEPDC4Q8N2C3 KRT16P2-201ENST00000414673 1423 ntBASIC18.32■□□□□ 0.52
DEPDC4Q8N2C3 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC18.32■□□□□ 0.52
DEPDC4Q8N2C3 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
DEPDC4Q8N2C3 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
DEPDC4Q8N2C3 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
DEPDC4Q8N2C3 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
DEPDC4Q8N2C3 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.32■□□□□ 0.52
DEPDC4Q8N2C3 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
DEPDC4Q8N2C3 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
DEPDC4Q8N2C3 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.32■□□□□ 0.52
DEPDC4Q8N2C3 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC18.32■□□□□ 0.52
DEPDC4Q8N2C3 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC18.32■□□□□ 0.52
DEPDC4Q8N2C3 TK2-208ENST00000545043 1120 ntTSL 2 BASIC18.32■□□□□ 0.52
DEPDC4Q8N2C3 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC18.32■□□□□ 0.52
DEPDC4Q8N2C3 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
DEPDC4Q8N2C3 MYCNOS-205ENST00000641950 531 ntBASIC18.32■□□□□ 0.52
DEPDC4Q8N2C3 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
DEPDC4Q8N2C3 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
DEPDC4Q8N2C3 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
DEPDC4Q8N2C3 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.32■□□□□ 0.52
DEPDC4Q8N2C3 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
DEPDC4Q8N2C3 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
DEPDC4Q8N2C3 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
DEPDC4Q8N2C3 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
DEPDC4Q8N2C3 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
DEPDC4Q8N2C3 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
DEPDC4Q8N2C3 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.32■□□□□ 0.52
DEPDC4Q8N2C3 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
DEPDC4Q8N2C3 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
DEPDC4Q8N2C3 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.31■□□□□ 0.52
DEPDC4Q8N2C3 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
DEPDC4Q8N2C3 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.31■□□□□ 0.52
DEPDC4Q8N2C3 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
DEPDC4Q8N2C3 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
DEPDC4Q8N2C3 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC18.31■□□□□ 0.52
DEPDC4Q8N2C3 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC18.31■□□□□ 0.52
DEPDC4Q8N2C3 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC18.31■□□□□ 0.52
DEPDC4Q8N2C3 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC18.31■□□□□ 0.52
DEPDC4Q8N2C3 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
DEPDC4Q8N2C3 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC18.31■□□□□ 0.52
DEPDC4Q8N2C3 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC18.31■□□□□ 0.52
DEPDC4Q8N2C3 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC18.31■□□□□ 0.52
DEPDC4Q8N2C3 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
DEPDC4Q8N2C3 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
DEPDC4Q8N2C3 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
DEPDC4Q8N2C3 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
DEPDC4Q8N2C3 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.31■□□□□ 0.52
DEPDC4Q8N2C3 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
DEPDC4Q8N2C3 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
DEPDC4Q8N2C3 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.3■□□□□ 0.52
DEPDC4Q8N2C3 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
DEPDC4Q8N2C3 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
DEPDC4Q8N2C3 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.3■□□□□ 0.52
DEPDC4Q8N2C3 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
DEPDC4Q8N2C3 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC18.3■□□□□ 0.52
DEPDC4Q8N2C3 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
DEPDC4Q8N2C3 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
DEPDC4Q8N2C3 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
DEPDC4Q8N2C3 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
DEPDC4Q8N2C3 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.3■□□□□ 0.52
DEPDC4Q8N2C3 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC18.3■□□□□ 0.52
DEPDC4Q8N2C3 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
DEPDC4Q8N2C3 AC007322.1-201ENST00000426983 750 ntBASIC18.3■□□□□ 0.52
DEPDC4Q8N2C3 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC18.3■□□□□ 0.52
DEPDC4Q8N2C3 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
DEPDC4Q8N2C3 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC18.3■□□□□ 0.52
DEPDC4Q8N2C3 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
DEPDC4Q8N2C3 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
DEPDC4Q8N2C3 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
DEPDC4Q8N2C3 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
DEPDC4Q8N2C3 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
DEPDC4Q8N2C3 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
DEPDC4Q8N2C3 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC18.3■□□□□ 0.52
DEPDC4Q8N2C3 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC18.29■□□□□ 0.52
DEPDC4Q8N2C3 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
DEPDC4Q8N2C3 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.29■□□□□ 0.52
DEPDC4Q8N2C3 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
DEPDC4Q8N2C3 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
DEPDC4Q8N2C3 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC18.29■□□□□ 0.52
DEPDC4Q8N2C3 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
DEPDC4Q8N2C3 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC18.29■□□□□ 0.52
DEPDC4Q8N2C3 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
DEPDC4Q8N2C3 PTPA-214ENST00000423100 988 ntTSL 2 BASIC18.29■□□□□ 0.52
DEPDC4Q8N2C3 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC18.29■□□□□ 0.52
DEPDC4Q8N2C3 MFSD11-216ENST00000590393 1141 ntBASIC18.29■□□□□ 0.52
DEPDC4Q8N2C3 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.29■□□□□ 0.52
DEPDC4Q8N2C3 KRT8P36-201ENST00000489121 1440 ntBASIC18.29■□□□□ 0.52
DEPDC4Q8N2C3 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
DEPDC4Q8N2C3 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
DEPDC4Q8N2C3 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
DEPDC4Q8N2C3 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
DEPDC4Q8N2C3 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
DEPDC4Q8N2C3 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
DEPDC4Q8N2C3 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
DEPDC4Q8N2C3 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms