Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
USP54Q70EL1 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
USP54Q70EL1 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC26.51■■□□□ 1.83
USP54Q70EL1 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
USP54Q70EL1 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
USP54Q70EL1 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
USP54Q70EL1 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
USP54Q70EL1 MOK-225ENST00000522867 1883 ntTSL 5 BASIC26.51■■□□□ 1.83
USP54Q70EL1 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC26.51■■□□□ 1.83
USP54Q70EL1 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC26.5■■□□□ 1.83
USP54Q70EL1 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC26.5■■□□□ 1.83
USP54Q70EL1 INGX-201ENST00000359239 846 ntBASIC26.5■■□□□ 1.83
USP54Q70EL1 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC26.5■■□□□ 1.83
USP54Q70EL1 STK25-234ENST00000535007 2459 ntTSL 2 BASIC26.5■■□□□ 1.83
USP54Q70EL1 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
USP54Q70EL1 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
USP54Q70EL1 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
USP54Q70EL1 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC26.5■■□□□ 1.83
USP54Q70EL1 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
USP54Q70EL1 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
USP54Q70EL1 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
USP54Q70EL1 MFAP1P1-201ENST00000442257 1255 ntBASIC26.5■■□□□ 1.83
USP54Q70EL1 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC26.5■■□□□ 1.83
USP54Q70EL1 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC26.5■■□□□ 1.83
USP54Q70EL1 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
USP54Q70EL1 WWOX-216ENST00000569818 525 ntBASIC26.5■■□□□ 1.83
USP54Q70EL1 AP000692.2-201ENST00000608391 879 ntBASIC26.5■■□□□ 1.83
USP54Q70EL1 AC011298.2-201ENST00000617989 482 ntBASIC26.5■■□□□ 1.83
USP54Q70EL1 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC26.5■■□□□ 1.83
USP54Q70EL1 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
USP54Q70EL1 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
USP54Q70EL1 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
USP54Q70EL1 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
USP54Q70EL1 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC26.49■■□□□ 1.83
USP54Q70EL1 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC26.49■■□□□ 1.83
USP54Q70EL1 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
USP54Q70EL1 AC004951.3-201ENST00000418645 1148 ntBASIC26.49■■□□□ 1.83
USP54Q70EL1 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC26.49■■□□□ 1.83
USP54Q70EL1 AC128688.1-201ENST00000487626 519 ntBASIC26.49■■□□□ 1.83
USP54Q70EL1 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC26.49■■□□□ 1.83
USP54Q70EL1 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
USP54Q70EL1 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC26.49■■□□□ 1.83
USP54Q70EL1 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
USP54Q70EL1 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC26.48■■□□□ 1.83
USP54Q70EL1 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
USP54Q70EL1 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC26.48■■□□□ 1.83
USP54Q70EL1 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
USP54Q70EL1 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC26.48■■□□□ 1.83
USP54Q70EL1 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC26.48■■□□□ 1.83
USP54Q70EL1 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC26.48■■□□□ 1.83
USP54Q70EL1 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
USP54Q70EL1 HMGA1P5-201ENST00000412453 271 ntBASIC26.47■■□□□ 1.83
USP54Q70EL1 FAM207BP-201ENST00000447172 505 ntBASIC26.47■■□□□ 1.83
USP54Q70EL1 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC26.47■■□□□ 1.83
USP54Q70EL1 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC26.47■■□□□ 1.83
USP54Q70EL1 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
USP54Q70EL1 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC26.47■■□□□ 1.83
USP54Q70EL1 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
USP54Q70EL1 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC26.47■■□□□ 1.83
USP54Q70EL1 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
USP54Q70EL1 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC26.47■■□□□ 1.83
USP54Q70EL1 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC26.47■■□□□ 1.83
USP54Q70EL1 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC26.47■■□□□ 1.83
USP54Q70EL1 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
USP54Q70EL1 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC26.47■■□□□ 1.83
USP54Q70EL1 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC26.47■■□□□ 1.83
USP54Q70EL1 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC26.47■■□□□ 1.83
USP54Q70EL1 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC26.47■■□□□ 1.83
USP54Q70EL1 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC26.47■■□□□ 1.83
USP54Q70EL1 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC26.46■■□□□ 1.83
USP54Q70EL1 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
USP54Q70EL1 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC26.46■■□□□ 1.83
USP54Q70EL1 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
USP54Q70EL1 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
USP54Q70EL1 AL137013.1-201ENST00000432946 1228 ntBASIC26.46■■□□□ 1.83
USP54Q70EL1 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC26.46■■□□□ 1.83
USP54Q70EL1 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC26.46■■□□□ 1.83
USP54Q70EL1 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC26.46■■□□□ 1.83
USP54Q70EL1 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC26.46■■□□□ 1.83
USP54Q70EL1 HIST1H2APS4-201ENST00000362070 348 ntBASIC26.45■■□□□ 1.82
USP54Q70EL1 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
USP54Q70EL1 AC104076.2-201ENST00000448912 469 ntBASIC26.45■■□□□ 1.82
USP54Q70EL1 TPM1-226ENST00000560959 925 ntTSL 2 BASIC26.45■■□□□ 1.82
USP54Q70EL1 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC26.45■■□□□ 1.82
USP54Q70EL1 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC26.45■■□□□ 1.82
USP54Q70EL1 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
USP54Q70EL1 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC26.45■■□□□ 1.82
USP54Q70EL1 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC26.45■■□□□ 1.82
USP54Q70EL1 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
USP54Q70EL1 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
USP54Q70EL1 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC26.45■■□□□ 1.82
USP54Q70EL1 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC26.44■■□□□ 1.82
USP54Q70EL1 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC26.44■■□□□ 1.82
USP54Q70EL1 AC091390.4-202ENST00000476426 537 ntBASIC26.44■■□□□ 1.82
USP54Q70EL1 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC26.44■■□□□ 1.82
USP54Q70EL1 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC26.44■■□□□ 1.82
USP54Q70EL1 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
USP54Q70EL1 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC26.44■■□□□ 1.82
USP54Q70EL1 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC26.44■■□□□ 1.82
USP54Q70EL1 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC26.44■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms