Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC25.04■■□□□ 1.6
RC3H1Q5TC82 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC25.04■■□□□ 1.6
RC3H1Q5TC82 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC25.04■■□□□ 1.6
RC3H1Q5TC82 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
RC3H1Q5TC82 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
RC3H1Q5TC82 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
RC3H1Q5TC82 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
RC3H1Q5TC82 AC009947.2-201ENST00000444014 672 ntBASIC25.03■■□□□ 1.6
RC3H1Q5TC82 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
RC3H1Q5TC82 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC25.03■■□□□ 1.6
RC3H1Q5TC82 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
RC3H1Q5TC82 AC141257.4-201ENST00000634557 245 ntBASIC25.03■■□□□ 1.6
RC3H1Q5TC82 AC136944.6-201ENST00000634818 245 ntBASIC25.03■■□□□ 1.6
RC3H1Q5TC82 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
RC3H1Q5TC82 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
RC3H1Q5TC82 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC25.03■■□□□ 1.6
RC3H1Q5TC82 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC25.03■■□□□ 1.6
RC3H1Q5TC82 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
RC3H1Q5TC82 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
RC3H1Q5TC82 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
RC3H1Q5TC82 FBXW4P1-201ENST00000426721 2239 ntBASIC25.02■■□□□ 1.6
RC3H1Q5TC82 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
RC3H1Q5TC82 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC25.02■■□□□ 1.6
RC3H1Q5TC82 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
RC3H1Q5TC82 PHGDH-210ENST00000641115 1638 ntBASIC25.02■■□□□ 1.6
RC3H1Q5TC82 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
RC3H1Q5TC82 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
RC3H1Q5TC82 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC25.02■■□□□ 1.6
RC3H1Q5TC82 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC25.02■■□□□ 1.6
RC3H1Q5TC82 CD70-202ENST00000423145 881 ntTSL 2 BASIC25.02■■□□□ 1.6
RC3H1Q5TC82 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC25.02■■□□□ 1.6
RC3H1Q5TC82 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC25.02■■□□□ 1.6
RC3H1Q5TC82 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC25.02■■□□□ 1.6
RC3H1Q5TC82 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
RC3H1Q5TC82 AC011558.1-201ENST00000623459 338 ntBASIC25.02■■□□□ 1.6
RC3H1Q5TC82 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC25.02■■□□□ 1.6
RC3H1Q5TC82 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC25.02■■□□□ 1.6
RC3H1Q5TC82 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC25.02■■□□□ 1.6
RC3H1Q5TC82 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC25.02■■□□□ 1.6
RC3H1Q5TC82 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC25.02■■□□□ 1.6
RC3H1Q5TC82 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
RC3H1Q5TC82 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
RC3H1Q5TC82 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
RC3H1Q5TC82 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC25.01■■□□□ 1.59
RC3H1Q5TC82 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC25.01■■□□□ 1.59
RC3H1Q5TC82 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC25.01■■□□□ 1.59
RC3H1Q5TC82 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
RC3H1Q5TC82 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC25.01■■□□□ 1.59
RC3H1Q5TC82 KRT18P56-201ENST00000507275 550 ntBASIC25.01■■□□□ 1.59
RC3H1Q5TC82 FAM86EP-206ENST00000510506 987 ntBASIC25.01■■□□□ 1.59
RC3H1Q5TC82 KRT126P-201ENST00000549467 1181 ntBASIC25.01■■□□□ 1.59
RC3H1Q5TC82 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC25.01■■□□□ 1.59
RC3H1Q5TC82 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
RC3H1Q5TC82 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC25.01■■□□□ 1.59
RC3H1Q5TC82 AL121956.5-201ENST00000625261 221 ntBASIC25.01■■□□□ 1.59
RC3H1Q5TC82 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC25.01■■□□□ 1.59
RC3H1Q5TC82 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC25.01■■□□□ 1.59
RC3H1Q5TC82 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC25.01■■□□□ 1.59
RC3H1Q5TC82 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC25.01■■□□□ 1.59
RC3H1Q5TC82 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
RC3H1Q5TC82 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC25■■□□□ 1.59
RC3H1Q5TC82 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC25■■□□□ 1.59
RC3H1Q5TC82 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC25■■□□□ 1.59
RC3H1Q5TC82 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC25■■□□□ 1.59
RC3H1Q5TC82 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC25■■□□□ 1.59
RC3H1Q5TC82 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC25■■□□□ 1.59
RC3H1Q5TC82 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC25■■□□□ 1.59
RC3H1Q5TC82 TSPY17P-201ENST00000450329 467 ntBASIC25■■□□□ 1.59
RC3H1Q5TC82 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC25■■□□□ 1.59
RC3H1Q5TC82 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC25■■□□□ 1.59
RC3H1Q5TC82 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC25■■□□□ 1.59
RC3H1Q5TC82 Z85996.1-201ENST00000494644 937 ntBASIC25■■□□□ 1.59
RC3H1Q5TC82 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC25■■□□□ 1.59
RC3H1Q5TC82 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC25■■□□□ 1.59
RC3H1Q5TC82 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC25■■□□□ 1.59
RC3H1Q5TC82 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
RC3H1Q5TC82 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC25■■□□□ 1.59
RC3H1Q5TC82 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
RC3H1Q5TC82 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC25■■□□□ 1.59
RC3H1Q5TC82 FEM1AP4-201ENST00000443167 1987 ntBASIC25■■□□□ 1.59
RC3H1Q5TC82 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
RC3H1Q5TC82 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC24.99■■□□□ 1.59
RC3H1Q5TC82 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC24.99■■□□□ 1.59
RC3H1Q5TC82 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
RC3H1Q5TC82 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
RC3H1Q5TC82 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC24.99■■□□□ 1.59
RC3H1Q5TC82 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
RC3H1Q5TC82 AC092647.4-201ENST00000457211 535 ntBASIC24.99■■□□□ 1.59
RC3H1Q5TC82 AL353719.1-201ENST00000566847 864 ntBASIC24.99■■□□□ 1.59
RC3H1Q5TC82 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC24.99■■□□□ 1.59
RC3H1Q5TC82 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC24.99■■□□□ 1.59
RC3H1Q5TC82 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC24.99■■□□□ 1.59
RC3H1Q5TC82 FP700111.2-201ENST00000619190 1892 ntBASIC24.99■■□□□ 1.59
RC3H1Q5TC82 AL031432.5-201ENST00000641059 760 ntBASIC24.99■■□□□ 1.59
RC3H1Q5TC82 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
RC3H1Q5TC82 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
RC3H1Q5TC82 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
RC3H1Q5TC82 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC24.98■■□□□ 1.59
RC3H1Q5TC82 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
RC3H1Q5TC82 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms