Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
PCDH1Q08174 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
PCDH1Q08174 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDH1Q08174 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.06■□□□□ 0.64
PCDH1Q08174 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDH1Q08174 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDH1Q08174 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.06■□□□□ 0.64
PCDH1Q08174 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC19.06■□□□□ 0.64
PCDH1Q08174 AL138781.1-201ENST00000566567 1274 ntBASIC19.06■□□□□ 0.64
PCDH1Q08174 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC19.06■□□□□ 0.64
PCDH1Q08174 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PCDH1Q08174 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDH1Q08174 AC133041.1-202ENST00000642053 222 ntBASIC19.06■□□□□ 0.64
PCDH1Q08174 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDH1Q08174 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDH1Q08174 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.06■□□□□ 0.64
PCDH1Q08174 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDH1Q08174 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PCDH1Q08174 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.06■□□□□ 0.64
PCDH1Q08174 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.06■□□□□ 0.64
PCDH1Q08174 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDH1Q08174 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PCDH1Q08174 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PCDH1Q08174 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.05■□□□□ 0.64
PCDH1Q08174 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.05■□□□□ 0.64
PCDH1Q08174 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
PCDH1Q08174 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
PCDH1Q08174 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PCDH1Q08174 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
PCDH1Q08174 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PCDH1Q08174 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.05■□□□□ 0.64
PCDH1Q08174 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PCDH1Q08174 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.05■□□□□ 0.64
PCDH1Q08174 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.05■□□□□ 0.64
PCDH1Q08174 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.05■□□□□ 0.64
PCDH1Q08174 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.05■□□□□ 0.64
PCDH1Q08174 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.05■□□□□ 0.64
PCDH1Q08174 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PCDH1Q08174 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PCDH1Q08174 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PCDH1Q08174 AC069152.1-201ENST00000438030 544 ntBASIC19.05■□□□□ 0.64
PCDH1Q08174 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC19.05■□□□□ 0.64
PCDH1Q08174 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC19.05■□□□□ 0.64
PCDH1Q08174 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC19.05■□□□□ 0.64
PCDH1Q08174 AC104771.1-201ENST00000603335 964 ntBASIC19.05■□□□□ 0.64
PCDH1Q08174 AC083880.1-201ENST00000608266 535 ntBASIC19.05■□□□□ 0.64
PCDH1Q08174 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.05■□□□□ 0.64
PCDH1Q08174 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PCDH1Q08174 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.05■□□□□ 0.64
PCDH1Q08174 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.05■□□□□ 0.64
PCDH1Q08174 TFP1-202ENST00000475455 1573 ntBASIC19.05■□□□□ 0.64
PCDH1Q08174 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.05■□□□□ 0.64
PCDH1Q08174 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PCDH1Q08174 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.05■□□□□ 0.64
PCDH1Q08174 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
PCDH1Q08174 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
PCDH1Q08174 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PCDH1Q08174 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PCDH1Q08174 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
PCDH1Q08174 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
PCDH1Q08174 AC018553.1-201ENST00000616682 1458 ntBASIC19.04■□□□□ 0.64
PCDH1Q08174 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PCDH1Q08174 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PCDH1Q08174 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PCDH1Q08174 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC19.04■□□□□ 0.64
PCDH1Q08174 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PCDH1Q08174 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.04■□□□□ 0.64
PCDH1Q08174 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.04■□□□□ 0.64
PCDH1Q08174 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
PCDH1Q08174 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC19.04■□□□□ 0.64
PCDH1Q08174 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
PCDH1Q08174 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.04■□□□□ 0.64
PCDH1Q08174 AC060766.5-201ENST00000590539 871 ntBASIC19.04■□□□□ 0.64
PCDH1Q08174 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC19.04■□□□□ 0.64
PCDH1Q08174 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC19.04■□□□□ 0.64
PCDH1Q08174 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
PCDH1Q08174 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PCDH1Q08174 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PCDH1Q08174 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
PCDH1Q08174 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PCDH1Q08174 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.04■□□□□ 0.64
PCDH1Q08174 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PCDH1Q08174 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.04■□□□□ 0.64
PCDH1Q08174 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDH1Q08174 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PCDH1Q08174 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.03■□□□□ 0.64
PCDH1Q08174 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
PCDH1Q08174 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PCDH1Q08174 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.03■□□□□ 0.64
PCDH1Q08174 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.03■□□□□ 0.64
PCDH1Q08174 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
PCDH1Q08174 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC19.03■□□□□ 0.64
PCDH1Q08174 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.03■□□□□ 0.64
PCDH1Q08174 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PCDH1Q08174 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC19.03■□□□□ 0.64
PCDH1Q08174 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.03■□□□□ 0.64
PCDH1Q08174 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDH1Q08174 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.03■□□□□ 0.64
PCDH1Q08174 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDH1Q08174 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms