Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLRN1P58418 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC17.65■□□□□ 0.42
CLRN1P58418 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLRN1P58418 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
CLRN1P58418 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC17.65■□□□□ 0.42
CLRN1P58418 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC17.65■□□□□ 0.42
CLRN1P58418 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLRN1P58418 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLRN1P58418 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC17.65■□□□□ 0.42
CLRN1P58418 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.42
CLRN1P58418 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.42
CLRN1P58418 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
CLRN1P58418 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLRN1P58418 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC17.64■□□□□ 0.41
CLRN1P58418 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC17.64■□□□□ 0.41
CLRN1P58418 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
CLRN1P58418 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLRN1P58418 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CLRN1P58418 GGT1-206ENST00000404223 952 ntTSL 2 BASIC17.64■□□□□ 0.41
CLRN1P58418 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC17.64■□□□□ 0.41
CLRN1P58418 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLRN1P58418 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLRN1P58418 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLRN1P58418 AP001271.2-201ENST00000624018 1556 ntBASIC17.64■□□□□ 0.41
CLRN1P58418 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLRN1P58418 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLRN1P58418 PHGDH-210ENST00000641115 1638 ntBASIC17.64■□□□□ 0.41
CLRN1P58418 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLRN1P58418 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC17.64■□□□□ 0.41
CLRN1P58418 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLRN1P58418 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CLRN1P58418 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
CLRN1P58418 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLRN1P58418 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLRN1P58418 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC17.64■□□□□ 0.41
CLRN1P58418 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLRN1P58418 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CLRN1P58418 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CLRN1P58418 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLRN1P58418 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLRN1P58418 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC17.63■□□□□ 0.41
CLRN1P58418 AL138781.1-201ENST00000566567 1274 ntBASIC17.63■□□□□ 0.41
CLRN1P58418 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC17.63■□□□□ 0.41
CLRN1P58418 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLRN1P58418 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC17.63■□□□□ 0.41
CLRN1P58418 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLRN1P58418 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
CLRN1P58418 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLRN1P58418 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC17.63■□□□□ 0.41
CLRN1P58418 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLRN1P58418 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLRN1P58418 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
CLRN1P58418 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CLRN1P58418 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLRN1P58418 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLRN1P58418 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLRN1P58418 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLRN1P58418 AC009237.14-201ENST00000609975 1594 ntBASIC17.62■□□□□ 0.41
CLRN1P58418 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
CLRN1P58418 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLRN1P58418 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CLRN1P58418 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLRN1P58418 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLRN1P58418 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLRN1P58418 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLRN1P58418 RER1-204ENST00000378518 522 ntTSL 3 BASIC17.62■□□□□ 0.41
CLRN1P58418 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLRN1P58418 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLRN1P58418 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLRN1P58418 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC17.62■□□□□ 0.41
CLRN1P58418 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC17.62■□□□□ 0.41
CLRN1P58418 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC17.62■□□□□ 0.41
CLRN1P58418 AC005829.2-201ENST00000571422 1056 ntBASIC17.62■□□□□ 0.41
CLRN1P58418 AC104771.1-201ENST00000603335 964 ntBASIC17.62■□□□□ 0.41
CLRN1P58418 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLRN1P58418 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC17.62■□□□□ 0.41
CLRN1P58418 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLRN1P58418 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CLRN1P58418 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLRN1P58418 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
CLRN1P58418 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CLRN1P58418 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLRN1P58418 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.62■□□□□ 0.41
CLRN1P58418 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLRN1P58418 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
CLRN1P58418 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLRN1P58418 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLRN1P58418 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLRN1P58418 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLRN1P58418 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC17.61■□□□□ 0.41
CLRN1P58418 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC17.61■□□□□ 0.41
CLRN1P58418 GATS-209ENST00000454084 1030 ntTSL 3 BASIC17.61■□□□□ 0.41
CLRN1P58418 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CLRN1P58418 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC17.61■□□□□ 0.41
CLRN1P58418 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLRN1P58418 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC17.61■□□□□ 0.41
CLRN1P58418 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC17.61■□□□□ 0.41
CLRN1P58418 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC17.61■□□□□ 0.41
CLRN1P58418 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
CLRN1P58418 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms