Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CDH11P55287 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CDH11P55287 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CDH11P55287 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CDH11P55287 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CDH11P55287 CD99P1-205ENST00000527459 561 ntBASIC18.05■□□□□ 0.48
CDH11P55287 PHB2-213ENST00000546111 858 ntTSL 2 BASIC18.05■□□□□ 0.48
CDH11P55287 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.05■□□□□ 0.48
CDH11P55287 PLLP-204ENST00000569059 665 ntTSL 3 BASIC18.05■□□□□ 0.48
CDH11P55287 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC18.05■□□□□ 0.48
CDH11P55287 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC18.05■□□□□ 0.48
CDH11P55287 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC18.05■□□□□ 0.48
CDH11P55287 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC18.05■□□□□ 0.48
CDH11P55287 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.05■□□□□ 0.48
CDH11P55287 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.05■□□□□ 0.48
CDH11P55287 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CDH11P55287 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
CDH11P55287 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CDH11P55287 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CDH11P55287 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CDH11P55287 AC120498.9-201ENST00000339021 3867 ntBASIC18.05■□□□□ 0.48
CDH11P55287 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CDH11P55287 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CDH11P55287 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC18.05■□□□□ 0.48
CDH11P55287 RBM17P2-201ENST00000616397 1405 ntBASIC18.05■□□□□ 0.48
CDH11P55287 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CDH11P55287 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH11P55287 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH11P55287 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CDH11P55287 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
CDH11P55287 CD37-204ENST00000535669 1674 ntTSL 2 BASIC18.04■□□□□ 0.48
CDH11P55287 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH11P55287 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC18.04■□□□□ 0.48
CDH11P55287 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH11P55287 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH11P55287 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC18.04■□□□□ 0.48
CDH11P55287 AC069152.1-201ENST00000438030 544 ntBASIC18.04■□□□□ 0.48
CDH11P55287 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.04■□□□□ 0.48
CDH11P55287 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CDH11P55287 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC18.04■□□□□ 0.48
CDH11P55287 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
CDH11P55287 AC016405.3-201ENST00000607710 860 ntBASIC18.04■□□□□ 0.48
CDH11P55287 OR10C1-204ENST00000622521 1039 ntBASIC18.04■□□□□ 0.48
CDH11P55287 AC133041.1-202ENST00000642053 222 ntBASIC18.04■□□□□ 0.48
CDH11P55287 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.04■□□□□ 0.48
CDH11P55287 TNXA-203ENST00000507684 2038 ntBASIC18.04■□□□□ 0.48
CDH11P55287 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH11P55287 AC093484.2-201ENST00000580996 2166 ntBASIC18.04■□□□□ 0.48
CDH11P55287 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
CDH11P55287 TREX1-205ENST00000625293 1783 ntBASIC18.04■□□□□ 0.48
CDH11P55287 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH11P55287 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CDH11P55287 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.03■□□□□ 0.48
CDH11P55287 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH11P55287 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH11P55287 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH11P55287 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH11P55287 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CDH11P55287 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH11P55287 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.03■□□□□ 0.48
CDH11P55287 AC091799.1-201ENST00000422823 811 ntBASIC18.03■□□□□ 0.48
CDH11P55287 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CDH11P55287 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.03■□□□□ 0.48
CDH11P55287 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH11P55287 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC18.03■□□□□ 0.48
CDH11P55287 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
CDH11P55287 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CDH11P55287 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH11P55287 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.03■□□□□ 0.48
CDH11P55287 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH11P55287 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH11P55287 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDH11P55287 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDH11P55287 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDH11P55287 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDH11P55287 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.02■□□□□ 0.48
CDH11P55287 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC18.02■□□□□ 0.48
CDH11P55287 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDH11P55287 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDH11P55287 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
CDH11P55287 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDH11P55287 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.02■□□□□ 0.48
CDH11P55287 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.02■□□□□ 0.48
CDH11P55287 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDH11P55287 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.02■□□□□ 0.48
CDH11P55287 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC18.02■□□□□ 0.48
CDH11P55287 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CDH11P55287 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC18.02■□□□□ 0.48
CDH11P55287 KRT18P6-201ENST00000555540 1265 ntBASIC18.02■□□□□ 0.48
CDH11P55287 AL591742.1-201ENST00000604433 565 ntBASIC18.02■□□□□ 0.48
CDH11P55287 AC243732.1-201ENST00000612648 864 ntBASIC18.02■□□□□ 0.48
CDH11P55287 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC18.02■□□□□ 0.48
CDH11P55287 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.02■□□□□ 0.47
CDH11P55287 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CDH11P55287 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.02■□□□□ 0.47
CDH11P55287 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
CDH11P55287 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CDH11P55287 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CDH11P55287 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CDH11P55287 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms