Protein–RNA interactions for Protein: P30622

CLIP1, CAP-Gly domain-containing linker protein 1, humanhuman

Predictions only

Length 1,438 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1P30622 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
CLIP1P30622 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC31.46■■■□□ 2.63
CLIP1P30622 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC31.46■■■□□ 2.63
CLIP1P30622 KRT18P21-201ENST00000515767 1272 ntBASIC31.46■■■□□ 2.63
CLIP1P30622 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC31.46■■■□□ 2.63
CLIP1P30622 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC31.46■■■□□ 2.63
CLIP1P30622 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
CLIP1P30622 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
CLIP1P30622 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
CLIP1P30622 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC31.45■■■□□ 2.63
CLIP1P30622 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
CLIP1P30622 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC31.45■■■□□ 2.63
CLIP1P30622 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC31.45■■■□□ 2.63
CLIP1P30622 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
CLIP1P30622 TMEM179-206ENST00000616017 1645 ntBASIC31.45■■■□□ 2.63
CLIP1P30622 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC31.45■■■□□ 2.63
CLIP1P30622 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC31.45■■■□□ 2.63
CLIP1P30622 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
CLIP1P30622 NUDT16P1-203ENST00000513809 620 ntBASIC31.45■■■□□ 2.63
CLIP1P30622 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC31.45■■■□□ 2.63
CLIP1P30622 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
CLIP1P30622 AL391422.3-201ENST00000603791 2761 ntBASIC31.45■■■□□ 2.62
CLIP1P30622 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC31.45■■■□□ 2.62
CLIP1P30622 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.62
CLIP1P30622 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.62
CLIP1P30622 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.62
CLIP1P30622 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC31.45■■■□□ 2.62
CLIP1P30622 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.62
CLIP1P30622 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC31.44■■■□□ 2.62
CLIP1P30622 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC31.44■■■□□ 2.62
CLIP1P30622 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
CLIP1P30622 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
CLIP1P30622 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
CLIP1P30622 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC31.44■■■□□ 2.62
CLIP1P30622 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
CLIP1P30622 AP003071.4-201ENST00000562276 1284 ntBASIC31.44■■■□□ 2.62
CLIP1P30622 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC31.44■■■□□ 2.62
CLIP1P30622 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
CLIP1P30622 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
CLIP1P30622 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC31.44■■■□□ 2.62
CLIP1P30622 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
CLIP1P30622 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
CLIP1P30622 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC31.44■■■□□ 2.62
CLIP1P30622 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
CLIP1P30622 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC31.43■■■□□ 2.62
CLIP1P30622 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
CLIP1P30622 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
CLIP1P30622 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
CLIP1P30622 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
CLIP1P30622 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
CLIP1P30622 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
CLIP1P30622 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
CLIP1P30622 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC31.43■■■□□ 2.62
CLIP1P30622 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
CLIP1P30622 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC31.43■■■□□ 2.62
CLIP1P30622 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC31.43■■■□□ 2.62
CLIP1P30622 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
CLIP1P30622 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC31.42■■■□□ 2.62
CLIP1P30622 KSR1P1-201ENST00000446298 240 ntBASIC31.42■■■□□ 2.62
CLIP1P30622 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
CLIP1P30622 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC31.42■■■□□ 2.62
CLIP1P30622 USP48-205ENST00000421625 2818 ntTSL 2 BASIC31.42■■■□□ 2.62
CLIP1P30622 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
CLIP1P30622 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC31.42■■■□□ 2.62
CLIP1P30622 GOLGA2P11-201ENST00000562660 1621 ntBASIC31.42■■■□□ 2.62
CLIP1P30622 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
CLIP1P30622 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC31.41■■■□□ 2.62
CLIP1P30622 PPOX-219ENST00000544598 813 ntTSL 2 BASIC31.41■■■□□ 2.62
CLIP1P30622 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
CLIP1P30622 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC31.41■■■□□ 2.62
CLIP1P30622 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
CLIP1P30622 KRT16P1-201ENST00000399124 1418 ntBASIC31.41■■■□□ 2.62
CLIP1P30622 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC31.41■■■□□ 2.62
CLIP1P30622 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
CLIP1P30622 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
CLIP1P30622 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC31.41■■■□□ 2.62
CLIP1P30622 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC31.41■■■□□ 2.62
CLIP1P30622 LINC01006-201ENST00000333319 2292 ntBASIC31.41■■■□□ 2.62
CLIP1P30622 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
CLIP1P30622 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC31.41■■■□□ 2.62
CLIP1P30622 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
CLIP1P30622 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC31.41■■■□□ 2.62
CLIP1P30622 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC31.41■■■□□ 2.62
CLIP1P30622 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC31.41■■■□□ 2.62
CLIP1P30622 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC31.41■■■□□ 2.62
CLIP1P30622 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
CLIP1P30622 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC31.4■■■□□ 2.62
CLIP1P30622 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
CLIP1P30622 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC31.4■■■□□ 2.62
CLIP1P30622 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC31.4■■■□□ 2.62
CLIP1P30622 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
CLIP1P30622 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
CLIP1P30622 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC31.4■■■□□ 2.62
CLIP1P30622 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
CLIP1P30622 TUBB8P6-201ENST00000436895 1288 ntBASIC31.4■■■□□ 2.62
CLIP1P30622 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC31.4■■■□□ 2.62
CLIP1P30622 REXO1L10P-201ENST00000615707 1290 ntBASIC31.4■■■□□ 2.62
CLIP1P30622 AL445675.2-201ENST00000620291 557 ntBASIC31.4■■■□□ 2.62
CLIP1P30622 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC31.4■■■□□ 2.62
CLIP1P30622 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC31.4■■■□□ 2.62
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms