Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.06■□□□□ 0.64
COL5A1P20908 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
COL5A1P20908 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
COL5A1P20908 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.06■□□□□ 0.64
COL5A1P20908 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL5A1P20908 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL5A1P20908 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
COL5A1P20908 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.06■□□□□ 0.64
COL5A1P20908 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL5A1P20908 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
COL5A1P20908 HIST1H2APS4-201ENST00000362070 348 ntBASIC19.06■□□□□ 0.64
COL5A1P20908 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC19.06■□□□□ 0.64
COL5A1P20908 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL5A1P20908 AC117947.1-201ENST00000427448 529 ntBASIC19.06■□□□□ 0.64
COL5A1P20908 TUBB8P6-201ENST00000436895 1288 ntBASIC19.06■□□□□ 0.64
COL5A1P20908 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC19.06■□□□□ 0.64
COL5A1P20908 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC19.06■□□□□ 0.64
COL5A1P20908 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC19.06■□□□□ 0.64
COL5A1P20908 FAM87A-204ENST00000613235 858 ntBASIC19.06■□□□□ 0.64
COL5A1P20908 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC19.06■□□□□ 0.64
COL5A1P20908 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL5A1P20908 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL5A1P20908 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL5A1P20908 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL5A1P20908 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.05■□□□□ 0.64
COL5A1P20908 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL5A1P20908 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL5A1P20908 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC19.05■□□□□ 0.64
COL5A1P20908 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.05■□□□□ 0.64
COL5A1P20908 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL5A1P20908 CRYGFP-201ENST00000418459 633 ntBASIC19.05■□□□□ 0.64
COL5A1P20908 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC19.05■□□□□ 0.64
COL5A1P20908 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL5A1P20908 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.05■□□□□ 0.64
COL5A1P20908 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL5A1P20908 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL5A1P20908 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL5A1P20908 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.05■□□□□ 0.64
COL5A1P20908 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.05■□□□□ 0.64
COL5A1P20908 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL5A1P20908 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL5A1P20908 GUK1-204ENST00000366721 689 ntTSL 3 BASIC19.04■□□□□ 0.64
COL5A1P20908 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
COL5A1P20908 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.04■□□□□ 0.64
COL5A1P20908 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC19.04■□□□□ 0.64
COL5A1P20908 METTL23-204ENST00000586752 904 ntTSL 2 BASIC19.04■□□□□ 0.64
COL5A1P20908 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC19.04■□□□□ 0.64
COL5A1P20908 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL5A1P20908 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL5A1P20908 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.04■□□□□ 0.64
COL5A1P20908 AL121603.2-201ENST00000557373 2117 ntBASIC19.04■□□□□ 0.64
COL5A1P20908 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL5A1P20908 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL5A1P20908 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL5A1P20908 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL5A1P20908 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL5A1P20908 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL5A1P20908 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
COL5A1P20908 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL5A1P20908 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
COL5A1P20908 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
COL5A1P20908 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.04■□□□□ 0.64
COL5A1P20908 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL5A1P20908 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.04■□□□□ 0.64
COL5A1P20908 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.04■□□□□ 0.64
COL5A1P20908 AC018553.1-201ENST00000616682 1458 ntBASIC19.03■□□□□ 0.64
COL5A1P20908 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A1P20908 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A1P20908 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A1P20908 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A1P20908 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC19.03■□□□□ 0.64
COL5A1P20908 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.03■□□□□ 0.64
COL5A1P20908 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
COL5A1P20908 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A1P20908 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
COL5A1P20908 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A1P20908 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC19.03■□□□□ 0.64
COL5A1P20908 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A1P20908 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A1P20908 CLDN5-201ENST00000403084 2357 ntBASIC19.03■□□□□ 0.64
COL5A1P20908 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A1P20908 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A1P20908 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A1P20908 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A1P20908 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A1P20908 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A1P20908 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.02■□□□□ 0.64
COL5A1P20908 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL5A1P20908 INGX-201ENST00000359239 846 ntBASIC19.02■□□□□ 0.64
COL5A1P20908 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL5A1P20908 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL5A1P20908 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL5A1P20908 UPK3BP1-201ENST00000428678 509 ntBASIC19.02■□□□□ 0.64
COL5A1P20908 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.02■□□□□ 0.64
COL5A1P20908 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL5A1P20908 YBX1P2-201ENST00000489612 999 ntBASIC19.02■□□□□ 0.64
COL5A1P20908 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC19.02■□□□□ 0.64
COL5A1P20908 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL5A1P20908 CYGB-204ENST00000589342 815 ntTSL 3 BASIC19.02■□□□□ 0.64
COL5A1P20908 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms