Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC092865.5-201ENST00000545435 363 ntBASIC20.41■□□□□ 0.86
COL9A1P20849 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL9A1P20849 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
COL9A1P20849 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.41■□□□□ 0.86
COL9A1P20849 KRT16P1-201ENST00000399124 1418 ntBASIC20.41■□□□□ 0.86
COL9A1P20849 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC20.41■□□□□ 0.86
COL9A1P20849 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL9A1P20849 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL9A1P20849 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL9A1P20849 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.41■□□□□ 0.86
COL9A1P20849 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL9A1P20849 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL9A1P20849 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
COL9A1P20849 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL9A1P20849 FXN-203ENST00000396366 922 ntTSL 2 BASIC20.4■□□□□ 0.86
COL9A1P20849 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL9A1P20849 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC20.4■□□□□ 0.86
COL9A1P20849 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC20.4■□□□□ 0.86
COL9A1P20849 KRT8P36-201ENST00000489121 1440 ntBASIC20.4■□□□□ 0.86
COL9A1P20849 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC20.4■□□□□ 0.86
COL9A1P20849 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC20.4■□□□□ 0.86
COL9A1P20849 AL031008.1-201ENST00000619963 541 ntBASIC20.4■□□□□ 0.86
COL9A1P20849 AL445675.2-201ENST00000620291 557 ntBASIC20.4■□□□□ 0.86
COL9A1P20849 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.39■□□□□ 0.86
COL9A1P20849 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
COL9A1P20849 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
COL9A1P20849 AC124283.5-201ENST00000624661 1809 ntBASIC20.39■□□□□ 0.86
COL9A1P20849 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.39■□□□□ 0.86
COL9A1P20849 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
COL9A1P20849 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL9A1P20849 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL9A1P20849 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL9A1P20849 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC20.39■□□□□ 0.85
COL9A1P20849 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC20.39■□□□□ 0.85
COL9A1P20849 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL9A1P20849 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC20.39■□□□□ 0.85
COL9A1P20849 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.39■□□□□ 0.85
COL9A1P20849 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC20.39■□□□□ 0.85
COL9A1P20849 AL139424.1-201ENST00000607572 797 ntBASIC20.39■□□□□ 0.85
COL9A1P20849 AC092119.3-201ENST00000612618 583 ntBASIC20.39■□□□□ 0.85
COL9A1P20849 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC20.39■□□□□ 0.85
COL9A1P20849 MIR2861-201ENST00000636310 90 ntBASIC20.39■□□□□ 0.85
COL9A1P20849 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL9A1P20849 FBXW4P1-201ENST00000426721 2239 ntBASIC20.39■□□□□ 0.85
COL9A1P20849 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
COL9A1P20849 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL9A1P20849 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL9A1P20849 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.38■□□□□ 0.85
COL9A1P20849 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
COL9A1P20849 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
COL9A1P20849 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL9A1P20849 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL9A1P20849 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.38■□□□□ 0.85
COL9A1P20849 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL9A1P20849 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL9A1P20849 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC20.38■□□□□ 0.85
COL9A1P20849 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC20.38■□□□□ 0.85
COL9A1P20849 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC20.38■□□□□ 0.85
COL9A1P20849 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC20.38■□□□□ 0.85
COL9A1P20849 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL9A1P20849 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC20.38■□□□□ 0.85
COL9A1P20849 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC20.38■□□□□ 0.85
COL9A1P20849 AL160237.2-201ENST00000556165 472 ntBASIC20.38■□□□□ 0.85
COL9A1P20849 AL136038.3-201ENST00000561909 1096 ntBASIC20.38■□□□□ 0.85
COL9A1P20849 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL9A1P20849 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL9A1P20849 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.38■□□□□ 0.85
COL9A1P20849 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL9A1P20849 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL9A1P20849 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL9A1P20849 KRT8P8-201ENST00000434750 1448 ntBASIC20.37■□□□□ 0.85
COL9A1P20849 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.37■□□□□ 0.85
COL9A1P20849 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL9A1P20849 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL9A1P20849 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL9A1P20849 PMS2P1-201ENST00000431037 1228 ntBASIC20.37■□□□□ 0.85
COL9A1P20849 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC20.37■□□□□ 0.85
COL9A1P20849 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.37■□□□□ 0.85
COL9A1P20849 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.37■□□□□ 0.85
COL9A1P20849 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.36■□□□□ 0.85
COL9A1P20849 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL9A1P20849 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.36■□□□□ 0.85
COL9A1P20849 AL024507.2-201ENST00000606070 2574 ntBASIC20.36■□□□□ 0.85
COL9A1P20849 AL117328.2-201ENST00000624617 1940 ntBASIC20.36■□□□□ 0.85
COL9A1P20849 ANKRD20A18P-201ENST00000359341 492 ntBASIC20.36■□□□□ 0.85
COL9A1P20849 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL9A1P20849 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC20.36■□□□□ 0.85
COL9A1P20849 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.36■□□□□ 0.85
COL9A1P20849 AC104692.2-201ENST00000603054 253 ntBASIC20.36■□□□□ 0.85
COL9A1P20849 AC120114.3-201ENST00000611923 658 ntBASIC20.36■□□□□ 0.85
COL9A1P20849 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL9A1P20849 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.36■□□□□ 0.85
COL9A1P20849 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
COL9A1P20849 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL9A1P20849 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL9A1P20849 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
COL9A1P20849 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL9A1P20849 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL9A1P20849 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL9A1P20849 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms