Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL2A1P02458 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC23.21■■□□□ 1.31
COL2A1P02458 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
COL2A1P02458 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.31
COL2A1P02458 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.31
COL2A1P02458 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC23.2■■□□□ 1.31
COL2A1P02458 KRT8P8-201ENST00000434750 1448 ntBASIC23.2■■□□□ 1.3
COL2A1P02458 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL2A1P02458 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL2A1P02458 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC23.2■■□□□ 1.3
COL2A1P02458 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
COL2A1P02458 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
COL2A1P02458 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC23.2■■□□□ 1.3
COL2A1P02458 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC23.2■■□□□ 1.3
COL2A1P02458 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
COL2A1P02458 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL2A1P02458 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL2A1P02458 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
COL2A1P02458 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL2A1P02458 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC23.2■■□□□ 1.3
COL2A1P02458 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL2A1P02458 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL2A1P02458 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
COL2A1P02458 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC23.19■■□□□ 1.3
COL2A1P02458 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC23.19■■□□□ 1.3
COL2A1P02458 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC23.19■■□□□ 1.3
COL2A1P02458 GLRB-205ENST00000512619 728 ntTSL 3 BASIC23.19■■□□□ 1.3
COL2A1P02458 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC23.19■■□□□ 1.3
COL2A1P02458 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
COL2A1P02458 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL2A1P02458 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC23.19■■□□□ 1.3
COL2A1P02458 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL2A1P02458 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL2A1P02458 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC23.19■■□□□ 1.3
COL2A1P02458 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL2A1P02458 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
COL2A1P02458 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC23.19■■□□□ 1.3
COL2A1P02458 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL2A1P02458 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
COL2A1P02458 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
COL2A1P02458 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL2A1P02458 NME1-207ENST00000480143 964 ntTSL 2 BASIC23.18■■□□□ 1.3
COL2A1P02458 Z85996.1-201ENST00000494644 937 ntBASIC23.18■■□□□ 1.3
COL2A1P02458 TMA16-209ENST00000513272 803 ntTSL 2 BASIC23.18■■□□□ 1.3
COL2A1P02458 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL2A1P02458 AL445228.2-201ENST00000605589 952 ntBASIC23.18■■□□□ 1.3
COL2A1P02458 AP000692.2-201ENST00000608391 879 ntBASIC23.18■■□□□ 1.3
COL2A1P02458 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
COL2A1P02458 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC23.18■■□□□ 1.3
COL2A1P02458 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
COL2A1P02458 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL2A1P02458 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC23.18■■□□□ 1.3
COL2A1P02458 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL2A1P02458 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC23.18■■□□□ 1.3
COL2A1P02458 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC23.18■■□□□ 1.3
COL2A1P02458 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
COL2A1P02458 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL2A1P02458 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL2A1P02458 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
COL2A1P02458 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC23.18■■□□□ 1.3
COL2A1P02458 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
COL2A1P02458 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
COL2A1P02458 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC23.17■■□□□ 1.3
COL2A1P02458 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC23.17■■□□□ 1.3
COL2A1P02458 EGLN1P1-201ENST00000531623 762 ntBASIC23.17■■□□□ 1.3
COL2A1P02458 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC23.17■■□□□ 1.3
COL2A1P02458 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL2A1P02458 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL2A1P02458 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL2A1P02458 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL2A1P02458 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
COL2A1P02458 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL2A1P02458 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL2A1P02458 MOK-225ENST00000522867 1883 ntTSL 5 BASIC23.17■■□□□ 1.3
COL2A1P02458 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL2A1P02458 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL2A1P02458 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL2A1P02458 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC23.17■■□□□ 1.3
COL2A1P02458 KRT18P57-201ENST00000443599 1254 ntBASIC23.17■■□□□ 1.3
COL2A1P02458 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC23.17■■□□□ 1.3
COL2A1P02458 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC23.17■■□□□ 1.3
COL2A1P02458 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL2A1P02458 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC23.16■■□□□ 1.3
COL2A1P02458 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC23.16■■□□□ 1.3
COL2A1P02458 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL2A1P02458 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL2A1P02458 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL2A1P02458 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC23.16■■□□□ 1.3
COL2A1P02458 AC004951.3-201ENST00000418645 1148 ntBASIC23.16■■□□□ 1.3
COL2A1P02458 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC23.16■■□□□ 1.3
COL2A1P02458 AC097488.1-201ENST00000507834 756 ntBASIC23.16■■□□□ 1.3
COL2A1P02458 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC23.16■■□□□ 1.3
COL2A1P02458 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC23.16■■□□□ 1.3
COL2A1P02458 AC011298.2-201ENST00000617989 482 ntBASIC23.16■■□□□ 1.3
COL2A1P02458 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC23.16■■□□□ 1.3
COL2A1P02458 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL2A1P02458 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
COL2A1P02458 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL2A1P02458 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC23.15■■□□□ 1.3
COL2A1P02458 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC23.15■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms