Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB3O15347 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB3O15347 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB3O15347 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC15.9■□□□□ 0.14
HMGB3O15347 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC15.9■□□□□ 0.14
HMGB3O15347 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB3O15347 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB3O15347 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC15.9■□□□□ 0.14
HMGB3O15347 SERBP1P1-201ENST00000396021 1160 ntBASIC15.9■□□□□ 0.14
HMGB3O15347 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB3O15347 AC009299.2-201ENST00000482477 511 ntBASIC15.9■□□□□ 0.14
HMGB3O15347 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB3O15347 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB3O15347 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC15.9■□□□□ 0.14
HMGB3O15347 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC15.9■□□□□ 0.14
HMGB3O15347 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC15.9■□□□□ 0.14
HMGB3O15347 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC15.9■□□□□ 0.14
HMGB3O15347 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB3O15347 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC15.9■□□□□ 0.14
HMGB3O15347 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB3O15347 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC15.9■□□□□ 0.14
HMGB3O15347 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC15.9■□□□□ 0.14
HMGB3O15347 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB3O15347 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC15.9■□□□□ 0.14
HMGB3O15347 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC15.9■□□□□ 0.14
HMGB3O15347 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB3O15347 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB3O15347 AC093503.3-201ENST00000624917 2352 ntBASIC15.9■□□□□ 0.14
HMGB3O15347 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB3O15347 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC15.89■□□□□ 0.14
HMGB3O15347 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB3O15347 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC15.89■□□□□ 0.13
HMGB3O15347 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB3O15347 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB3O15347 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB3O15347 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB3O15347 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC15.89■□□□□ 0.13
HMGB3O15347 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB3O15347 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB3O15347 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC15.89■□□□□ 0.13
HMGB3O15347 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC15.89■□□□□ 0.13
HMGB3O15347 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC15.89■□□□□ 0.13
HMGB3O15347 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC15.89■□□□□ 0.13
HMGB3O15347 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC15.89■□□□□ 0.13
HMGB3O15347 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
HMGB3O15347 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB3O15347 AC007613.1-201ENST00000572811 2597 ntBASIC15.89■□□□□ 0.13
HMGB3O15347 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB3O15347 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB3O15347 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB3O15347 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB3O15347 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC15.89■□□□□ 0.13
HMGB3O15347 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
HMGB3O15347 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB3O15347 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB3O15347 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB3O15347 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB3O15347 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
HMGB3O15347 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB3O15347 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
HMGB3O15347 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB3O15347 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB3O15347 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC15.88■□□□□ 0.13
HMGB3O15347 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
HMGB3O15347 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB3O15347 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC15.88■□□□□ 0.13
HMGB3O15347 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB3O15347 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC15.88■□□□□ 0.13
HMGB3O15347 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB3O15347 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC15.88■□□□□ 0.13
HMGB3O15347 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC15.88■□□□□ 0.13
HMGB3O15347 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC15.88■□□□□ 0.13
HMGB3O15347 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB3O15347 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB3O15347 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB3O15347 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB3O15347 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB3O15347 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB3O15347 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC15.88■□□□□ 0.13
HMGB3O15347 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB3O15347 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC15.88■□□□□ 0.13
HMGB3O15347 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB3O15347 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC15.88■□□□□ 0.13
HMGB3O15347 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB3O15347 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC15.88■□□□□ 0.13
HMGB3O15347 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC15.88■□□□□ 0.13
HMGB3O15347 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB3O15347 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC15.88■□□□□ 0.13
HMGB3O15347 AC055733.4-201ENST00000638462 1354 ntBASIC15.87■□□□□ 0.13
HMGB3O15347 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB3O15347 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC15.87■□□□□ 0.13
HMGB3O15347 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB3O15347 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB3O15347 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB3O15347 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC15.87■□□□□ 0.13
HMGB3O15347 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC15.87■□□□□ 0.13
HMGB3O15347 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB3O15347 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC15.87■□□□□ 0.13
HMGB3O15347 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB3O15347 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms