Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC7.09□□□□□ -1.27
HPS3Q969F9 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC7.09□□□□□ -1.27
HPS3Q969F9 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
HPS3Q969F9 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.28
HPS3Q969F9 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC7.09□□□□□ -1.28
HPS3Q969F9 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC7.09□□□□□ -1.28
HPS3Q969F9 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC7.08□□□□□ -1.28
HPS3Q969F9 AKAP6-213ENST00000557354 5259 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
HPS3Q969F9 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
HPS3Q969F9 AC011455.2-201ENST00000599320 3336 ntBASIC7.08□□□□□ -1.28
HPS3Q969F9 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC7.08□□□□□ -1.28
HPS3Q969F9 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC7.08□□□□□ -1.28
HPS3Q969F9 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC7.08□□□□□ -1.28
HPS3Q969F9 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC7.08□□□□□ -1.28
HPS3Q969F9 GSTA5-201ENST00000284562 845 ntAPPRIS P1 TSL 5 BASIC7.08□□□□□ -1.28
HPS3Q969F9 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
HPS3Q969F9 CCL20-202ENST00000409189 839 ntAPPRIS ALT1 TSL 1 (best) BASIC7.08□□□□□ -1.28
HPS3Q969F9 SMARCE1P1-201ENST00000417747 1186 ntBASIC7.08□□□□□ -1.28
HPS3Q969F9 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC7.08□□□□□ -1.28
HPS3Q969F9 AC023141.6-201ENST00000429418 337 ntBASIC7.08□□□□□ -1.28
HPS3Q969F9 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
HPS3Q969F9 HSFY7P-201ENST00000432672 318 ntBASIC7.08□□□□□ -1.28
HPS3Q969F9 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC7.08□□□□□ -1.28
HPS3Q969F9 CLNS1AP1-201ENST00000435954 682 ntBASIC7.08□□□□□ -1.28
HPS3Q969F9 MRPS21P3-201ENST00000436696 262 ntBASIC7.08□□□□□ -1.28
HPS3Q969F9 HSFY8P-201ENST00000437934 318 ntBASIC7.08□□□□□ -1.28
HPS3Q969F9 ARMC4P1-201ENST00000438905 707 ntBASIC7.08□□□□□ -1.28
HPS3Q969F9 SCAND3P1-201ENST00000439854 1060 ntBASIC7.08□□□□□ -1.28
HPS3Q969F9 AL031681.1-201ENST00000443304 400 ntBASIC7.08□□□□□ -1.28
HPS3Q969F9 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC7.08□□□□□ -1.28
HPS3Q969F9 HSFY5P-201ENST00000453726 309 ntBASIC7.08□□□□□ -1.28
HPS3Q969F9 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC7.08□□□□□ -1.28
HPS3Q969F9 CT45A5-201ENST00000487941 1161 ntAPPRIS P1 TSL 2 BASIC7.08□□□□□ -1.28
HPS3Q969F9 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC7.08□□□□□ -1.28
HPS3Q969F9 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC7.08□□□□□ -1.28
HPS3Q969F9 RNA5SP418-201ENST00000515951 117 ntBASIC7.08□□□□□ -1.28
HPS3Q969F9 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC7.08□□□□□ -1.28
HPS3Q969F9 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC7.08□□□□□ -1.28
HPS3Q969F9 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
HPS3Q969F9 NPM1P5-201ENST00000557228 838 ntBASIC7.08□□□□□ -1.28
HPS3Q969F9 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC7.08□□□□□ -1.28
HPS3Q969F9 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC7.08□□□□□ -1.28
HPS3Q969F9 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC7.08□□□□□ -1.28
HPS3Q969F9 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC7.08□□□□□ -1.28
HPS3Q969F9 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC7.08□□□□□ -1.28
HPS3Q969F9 GAPDHP41-201ENST00000613707 975 ntBASIC7.08□□□□□ -1.28
HPS3Q969F9 AC068213.1-201ENST00000625124 226 ntBASIC7.08□□□□□ -1.28
HPS3Q969F9 AL590396.2-201ENST00000636511 1041 ntBASIC7.08□□□□□ -1.28
HPS3Q969F9 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
HPS3Q969F9 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC7.08□□□□□ -1.28
HPS3Q969F9 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
HPS3Q969F9 AC010401.2-201ENST00000575137 4934 ntBASIC7.08□□□□□ -1.28
HPS3Q969F9 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC7.08□□□□□ -1.28
HPS3Q969F9 RPL17-C18orf32-203ENST00000584895 1440 ntAPPRIS P1 TSL 3 BASIC7.08□□□□□ -1.28
HPS3Q969F9 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
HPS3Q969F9 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
HPS3Q969F9 GDA-209ENST00000545168 5362 ntTSL 2 BASIC7.08□□□□□ -1.28
HPS3Q969F9 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
HPS3Q969F9 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC7.08□□□□□ -1.28
HPS3Q969F9 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC7.08□□□□□ -1.28
HPS3Q969F9 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC7.08□□□□□ -1.28
HPS3Q969F9 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
HPS3Q969F9 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC7.07□□□□□ -1.28
HPS3Q969F9 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
HPS3Q969F9 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
HPS3Q969F9 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC7.07□□□□□ -1.28
HPS3Q969F9 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC7.07□□□□□ -1.28
HPS3Q969F9 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
HPS3Q969F9 FTO-215ENST00000636491 1676 ntTSL 5 BASIC7.07□□□□□ -1.28
HPS3Q969F9 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC7.07□□□□□ -1.28
HPS3Q969F9 LTA4H-209ENST00000552789 2025 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
HPS3Q969F9 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC7.07□□□□□ -1.28
HPS3Q969F9 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC7.07□□□□□ -1.28
HPS3Q969F9 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
HPS3Q969F9 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC7.07□□□□□ -1.28
HPS3Q969F9 ZNF66-202ENST00000360204 1120 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
HPS3Q969F9 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
HPS3Q969F9 SNORD94-201ENST00000386037 137 ntBASIC7.07□□□□□ -1.28
HPS3Q969F9 TRIM60P17-201ENST00000415181 719 ntBASIC7.07□□□□□ -1.28
HPS3Q969F9 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC7.07□□□□□ -1.28
HPS3Q969F9 AL157884.1-201ENST00000424561 454 ntBASIC7.07□□□□□ -1.28
HPS3Q969F9 RNF19BPX-201ENST00000426224 625 ntBASIC7.07□□□□□ -1.28
HPS3Q969F9 NPM1P26-201ENST00000426339 738 ntBASIC7.07□□□□□ -1.28
HPS3Q969F9 OR6R1P-201ENST00000431838 940 ntBASIC7.07□□□□□ -1.28
HPS3Q969F9 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC7.07□□□□□ -1.28
HPS3Q969F9 ARL5AP3-201ENST00000439327 386 ntBASIC7.07□□□□□ -1.28
HPS3Q969F9 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC7.07□□□□□ -1.28
HPS3Q969F9 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC7.07□□□□□ -1.28
HPS3Q969F9 RN7SL502P-201ENST00000481857 290 ntBASIC7.07□□□□□ -1.28
HPS3Q969F9 RPS7P11-201ENST00000484240 586 ntBASIC7.07□□□□□ -1.28
HPS3Q969F9 AC104629.1-201ENST00000494226 508 ntBASIC7.07□□□□□ -1.28
HPS3Q969F9 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
HPS3Q969F9 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC7.07□□□□□ -1.28
HPS3Q969F9 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC7.07□□□□□ -1.28
HPS3Q969F9 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC7.07□□□□□ -1.28
HPS3Q969F9 IGKV1D-22-201ENST00000518953 324 ntBASIC7.07□□□□□ -1.28
HPS3Q969F9 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC7.07□□□□□ -1.28
HPS3Q969F9 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC7.07□□□□□ -1.28
HPS3Q969F9 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC7.07□□□□□ -1.28
HPS3Q969F9 AL049836.2-201ENST00000553318 513 ntTSL 5 BASIC7.07□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 67.8 ms