Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
C9orf40Q8IXQ3 CCNT2P1-201ENST00000423082 1315 ntBASIC5.69□□□□□ -1.5
C9orf40Q8IXQ3 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC5.69□□□□□ -1.5
C9orf40Q8IXQ3 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
C9orf40Q8IXQ3 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
C9orf40Q8IXQ3 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
C9orf40Q8IXQ3 SHQ1P1-201ENST00000437111 1544 ntBASIC5.69□□□□□ -1.5
C9orf40Q8IXQ3 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
C9orf40Q8IXQ3 C14orf105-201ENST00000216445 3082 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 AL161901.1-201ENST00000624954 3425 ntBASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 AL354854.1-201ENST00000455940 1363 ntBASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 DMD-211ENST00000378707 7410 ntTSL 5 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 RNU1-134P-201ENST00000362935 165 ntBASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 RNA5SP251-201ENST00000410614 137 ntBASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 TMA16P2-201ENST00000413187 601 ntBASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 RPL35AP31-201ENST00000418340 337 ntBASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 LINC01114-201ENST00000421071 482 ntTSL 3 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 AC007278.2-201ENST00000436582 1200 ntTSL 3 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 AL353662.1-201ENST00000439099 327 ntBASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 SEPT14P12-201ENST00000442280 560 ntBASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 AL136982.3-201ENST00000454709 688 ntTSL 3 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 AC112187.1-201ENST00000455837 479 ntBASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 AC009963.3-201ENST00000458090 486 ntBASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 AC004594.1-201ENST00000482375 463 ntTSL 3 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 FAU-203ENST00000525297 355 ntTSL 5 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 OLR1-210ENST00000544577 924 ntTSL 5 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 AC092332.1-201ENST00000563684 829 ntBASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 AC134669.1-201ENST00000581275 672 ntBASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 MIR4420-201ENST00000583944 77 ntBASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 AL499605.1-201ENST00000604628 403 ntBASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 AP001437.1-201ENST00000608783 456 ntBASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 AC116667.2-201ENST00000641075 823 ntBASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 AC068769.1-201ENST00000474767 2426 ntBASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 USP40-202ENST00000409945 1946 ntTSL 2 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
C9orf40Q8IXQ3 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC5.67□□□□□ -1.5
C9orf40Q8IXQ3 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
C9orf40Q8IXQ3 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
C9orf40Q8IXQ3 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
C9orf40Q8IXQ3 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
C9orf40Q8IXQ3 MTND5P12-201ENST00000502851 1449 ntBASIC5.67□□□□□ -1.5
C9orf40Q8IXQ3 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
C9orf40Q8IXQ3 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC5.67□□□□□ -1.5
C9orf40Q8IXQ3 AC119674.1-202ENST00000641333 1860 ntBASIC5.67□□□□□ -1.5
C9orf40Q8IXQ3 LINC00293-204ENST00000521715 1498 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
C9orf40Q8IXQ3 RNA5SP375-201ENST00000362975 119 ntBASIC5.67□□□□□ -1.5
C9orf40Q8IXQ3 CRP-204ENST00000368112 787 ntTSL 2 BASIC5.67□□□□□ -1.5
C9orf40Q8IXQ3 MIR130B-202ENST00000385018 82 ntBASIC5.67□□□□□ -1.5
C9orf40Q8IXQ3 AC116036.1-201ENST00000412199 367 ntBASIC5.67□□□□□ -1.5
C9orf40Q8IXQ3 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
C9orf40Q8IXQ3 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC5.67□□□□□ -1.5
C9orf40Q8IXQ3 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC5.67□□□□□ -1.5
C9orf40Q8IXQ3 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC5.67□□□□□ -1.5
C9orf40Q8IXQ3 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC5.67□□□□□ -1.5
C9orf40Q8IXQ3 AMYP1-201ENST00000440059 1023 ntBASIC5.67□□□□□ -1.5
C9orf40Q8IXQ3 H3F3BP1-201ENST00000440551 403 ntBASIC5.67□□□□□ -1.5
C9orf40Q8IXQ3 RPL6P30-201ENST00000443382 862 ntBASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms