Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC022400.9-201ENST00000623633 273 ntBASIC6.78□□□□□ -1.32
USP39Q53GS9 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC6.78□□□□□ -1.32
USP39Q53GS9 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC6.78□□□□□ -1.32
USP39Q53GS9 AC119674.1-220ENST00000641502 1048 ntBASIC6.78□□□□□ -1.32
USP39Q53GS9 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC6.78□□□□□ -1.32
USP39Q53GS9 LPAL2-203ENST00000454031 2498 ntBASIC6.78□□□□□ -1.32
USP39Q53GS9 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC6.78□□□□□ -1.32
USP39Q53GS9 AC022075.1-201ENST00000500682 2830 ntTSL 2 BASIC6.78□□□□□ -1.32
USP39Q53GS9 LCP1-201ENST00000323076 3787 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
USP39Q53GS9 ELMO1-202ENST00000396040 1982 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
USP39Q53GS9 NLRP13-202ENST00000588751 3533 ntAPPRIS ALT2 TSL 5 BASIC6.78□□□□□ -1.32
USP39Q53GS9 CLTC-210ENST00000579456 2301 ntTSL 5 BASIC6.78□□□□□ -1.32
USP39Q53GS9 CACNA2D3-212ENST00000620722 3296 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
USP39Q53GS9 SHC4-202ENST00000396535 2799 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
USP39Q53GS9 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
USP39Q53GS9 AC073342.2-201ENST00000595842 1800 ntBASIC6.78□□□□□ -1.32
USP39Q53GS9 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
USP39Q53GS9 USP40-202ENST00000409945 1946 ntTSL 2 BASIC6.78□□□□□ -1.32
USP39Q53GS9 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
USP39Q53GS9 CHCHD7-203ENST00000396723 1550 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
USP39Q53GS9 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC6.78□□□□□ -1.32
USP39Q53GS9 DEUP1-209ENST00000531792 1656 ntTSL 1 (best) BASIC6.77□□□□□ -1.32
USP39Q53GS9 PRND-201ENST00000305817 3980 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.32
USP39Q53GS9 AL645568.2-201ENST00000432815 1337 ntBASIC6.77□□□□□ -1.32
USP39Q53GS9 AC127070.3-201ENST00000503695 3263 ntBASIC6.77□□□□□ -1.33
USP39Q53GS9 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
USP39Q53GS9 AL031651.1-201ENST00000615357 1438 ntBASIC6.77□□□□□ -1.33
USP39Q53GS9 SLC25A40-201ENST00000341119 4045 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
USP39Q53GS9 XPO1-202ENST00000404992 4105 ntAPPRIS P1 TSL 2 BASIC6.77□□□□□ -1.33
USP39Q53GS9 QRSL1P1-201ENST00000400977 1540 ntBASIC6.77□□□□□ -1.33
USP39Q53GS9 DTNA-226ENST00000596745 1508 ntTSL 2 BASIC6.77□□□□□ -1.33
USP39Q53GS9 RORA-201ENST00000261523 1951 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
USP39Q53GS9 AL391262.1-201ENST00000556558 1992 ntBASIC6.77□□□□□ -1.33
USP39Q53GS9 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
USP39Q53GS9 USP16-203ENST00000399975 2960 ntAPPRIS ALT1 TSL 1 (best) BASIC6.77□□□□□ -1.33
USP39Q53GS9 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
USP39Q53GS9 ADH1B-201ENST00000305046 4072 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
USP39Q53GS9 ZNF790-206ENST00000613249 2183 ntAPPRIS P1 TSL 4 BASIC6.77□□□□□ -1.33
USP39Q53GS9 LRRC37B-201ENST00000327564 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC6.77□□□□□ -1.33
USP39Q53GS9 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
USP39Q53GS9 LINC01492-201ENST00000411575 3738 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
USP39Q53GS9 HIST1H2BA-201ENST00000274764 516 ntAPPRIS P1 BASIC6.77□□□□□ -1.33
USP39Q53GS9 RNA5SP435-201ENST00000364044 108 ntBASIC6.77□□□□□ -1.33
USP39Q53GS9 RNU1-55P-201ENST00000365510 158 ntBASIC6.77□□□□□ -1.33
USP39Q53GS9 YWHAZP4-201ENST00000392459 708 ntBASIC6.77□□□□□ -1.33
USP39Q53GS9 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC6.77□□□□□ -1.33
USP39Q53GS9 DUTP4-201ENST00000424782 475 ntBASIC6.77□□□□□ -1.33
USP39Q53GS9 VN1R20P-201ENST00000425215 966 ntBASIC6.77□□□□□ -1.33
USP39Q53GS9 AC116038.1-201ENST00000432250 408 ntTSL 3 BASIC6.77□□□□□ -1.33
USP39Q53GS9 NFIA-AS2-203ENST00000438559 1275 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
USP39Q53GS9 AC114812.2-201ENST00000439336 663 ntTSL 2 BASIC6.77□□□□□ -1.33
USP39Q53GS9 AC092685.1-201ENST00000447960 1243 ntBASIC6.77□□□□□ -1.33
USP39Q53GS9 RN7SL552P-201ENST00000462094 276 ntBASIC6.77□□□□□ -1.33
USP39Q53GS9 AP002884.1-201ENST00000479691 655 ntBASIC6.77□□□□□ -1.33
USP39Q53GS9 AL133372.1-201ENST00000493565 745 ntBASIC6.77□□□□□ -1.33
USP39Q53GS9 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC6.77□□□□□ -1.33
USP39Q53GS9 AC092903.2-201ENST00000510244 427 ntTSL 5 BASIC6.77□□□□□ -1.33
USP39Q53GS9 UGT2A3P7-201ENST00000510485 734 ntBASIC6.77□□□□□ -1.33
USP39Q53GS9 AC034205.1-201ENST00000520621 638 ntBASIC6.77□□□□□ -1.33
USP39Q53GS9 AC022973.4-201ENST00000524100 917 ntTSL 2 BASIC6.77□□□□□ -1.33
USP39Q53GS9 EIF4A2P3-201ENST00000525903 1055 ntBASIC6.77□□□□□ -1.33
USP39Q53GS9 AC135983.3-201ENST00000528049 1226 ntBASIC6.77□□□□□ -1.33
USP39Q53GS9 OR4A21P-201ENST00000532759 944 ntBASIC6.77□□□□□ -1.33
USP39Q53GS9 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC6.77□□□□□ -1.33
USP39Q53GS9 KLRD1-209ENST00000543420 802 ntTSL 5 BASIC6.77□□□□□ -1.33
USP39Q53GS9 AC139697.1-201ENST00000548429 745 ntBASIC6.77□□□□□ -1.33
USP39Q53GS9 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC6.77□□□□□ -1.33
USP39Q53GS9 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC6.77□□□□□ -1.33
USP39Q53GS9 AC027216.1-201ENST00000577726 685 ntBASIC6.77□□□□□ -1.33
USP39Q53GS9 AC005726.4-201ENST00000582858 458 ntBASIC6.77□□□□□ -1.33
USP39Q53GS9 SYPL1P2-201ENST00000582878 727 ntBASIC6.77□□□□□ -1.33
USP39Q53GS9 AP005136.2-201ENST00000583253 1049 ntBASIC6.77□□□□□ -1.33
USP39Q53GS9 AC006305.2-201ENST00000589617 552 ntTSL 4 BASIC6.77□□□□□ -1.33
USP39Q53GS9 AL589765.6-201ENST00000601909 549 ntBASIC6.77□□□□□ -1.33
USP39Q53GS9 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC6.77□□□□□ -1.33
USP39Q53GS9 AC096586.1-201ENST00000610267 561 ntBASIC6.77□□□□□ -1.33
USP39Q53GS9 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC6.77□□□□□ -1.33
USP39Q53GS9 RN7SL261P-201ENST00000613441 282 ntBASIC6.77□□□□□ -1.33
USP39Q53GS9 AC025262.3-201ENST00000623666 360 ntBASIC6.77□□□□□ -1.33
USP39Q53GS9 AC004808.1-201ENST00000627671 721 ntBASIC6.77□□□□□ -1.33
USP39Q53GS9 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC6.77□□□□□ -1.33
USP39Q53GS9 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
USP39Q53GS9 AC121761.1-201ENST00000547326 1482 ntTSL 3 BASIC6.77□□□□□ -1.33
USP39Q53GS9 AP004289.1-201ENST00000436307 2205 ntBASIC6.77□□□□□ -1.33
USP39Q53GS9 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC6.77□□□□□ -1.33
USP39Q53GS9 AC016251.2-201ENST00000623393 3089 ntBASIC6.77□□□□□ -1.33
USP39Q53GS9 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
USP39Q53GS9 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC6.77□□□□□ -1.33
USP39Q53GS9 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC6.77□□□□□ -1.33
USP39Q53GS9 AC099062.1-202ENST00000640362 3864 ntTSL 5 BASIC6.76□□□□□ -1.33
USP39Q53GS9 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
USP39Q53GS9 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC6.76□□□□□ -1.33
USP39Q53GS9 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC6.76□□□□□ -1.33
USP39Q53GS9 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
USP39Q53GS9 C2CD5-212ENST00000542676 3438 ntTSL 2 BASIC6.76□□□□□ -1.33
USP39Q53GS9 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC6.76□□□□□ -1.33
USP39Q53GS9 CD53-201ENST00000271324 1505 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
USP39Q53GS9 AC012668.3-202ENST00000417485 1642 ntTSL 5 BASIC6.76□□□□□ -1.33
USP39Q53GS9 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
USP39Q53GS9 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms