Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 GAS2-201ENST00000278187 2170 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
MSH6P52701 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
MSH6P52701 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
MSH6P52701 LHX9-201ENST00000367387 7836 ntAPPRIS P3 TSL 1 (best) BASIC8.51□□□□□ -1.05
MSH6P52701 CACNB2-207ENST00000377329 3396 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
MSH6P52701 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC8.51□□□□□ -1.05
MSH6P52701 IL22RA2-203ENST00000349184 2801 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
MSH6P52701 PDZK1P1-202ENST00000425209 1350 ntBASIC8.5□□□□□ -1.05
MSH6P52701 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC8.5□□□□□ -1.05
MSH6P52701 HBS1L-212ENST00000527578 2618 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
MSH6P52701 ITSN1-206ENST00000381318 17015 ntAPPRIS P3 TSL 1 (best) BASIC8.5□□□□□ -1.05
MSH6P52701 AC103591.2-201ENST00000265259 766 ntBASIC8.5□□□□□ -1.05
MSH6P52701 RPL37P18-201ENST00000411602 243 ntBASIC8.5□□□□□ -1.05
MSH6P52701 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC8.5□□□□□ -1.05
MSH6P52701 GAPDHP23-201ENST00000444823 993 ntBASIC8.5□□□□□ -1.05
MSH6P52701 LRRC37A14P-201ENST00000452297 462 ntBASIC8.5□□□□□ -1.05
MSH6P52701 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC8.5□□□□□ -1.05
MSH6P52701 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC8.5□□□□□ -1.05
MSH6P52701 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC8.5□□□□□ -1.05
MSH6P52701 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC8.5□□□□□ -1.05
MSH6P52701 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC8.5□□□□□ -1.05
MSH6P52701 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
MSH6P52701 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
MSH6P52701 COG2-209ENST00000534989 2963 ntTSL 2 BASIC8.5□□□□□ -1.05
MSH6P52701 SYTL5-202ENST00000456733 4704 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
MSH6P52701 C1QTNF7-201ENST00000295297 4516 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
MSH6P52701 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC8.5□□□□□ -1.05
MSH6P52701 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
MSH6P52701 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC8.5□□□□□ -1.05
MSH6P52701 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
MSH6P52701 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
MSH6P52701 PPP1R12B-216ENST00000608999 15248 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
MSH6P52701 NDRG3-204ENST00000373803 2978 ntTSL 5 BASIC8.5□□□□□ -1.05
MSH6P52701 AHI1-204ENST00000367800 5921 ntAPPRIS P2 TSL 1 (best) BASIC8.5□□□□□ -1.05
MSH6P52701 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC8.5□□□□□ -1.05
MSH6P52701 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC8.5□□□□□ -1.05
MSH6P52701 KCNMB3P1-202ENST00000493696 3389 ntBASIC8.49□□□□□ -1.05
MSH6P52701 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC8.49□□□□□ -1.05
MSH6P52701 MIR541-201ENST00000401360 84 ntBASIC8.49□□□□□ -1.05
MSH6P52701 RN7SKP125-201ENST00000410481 302 ntBASIC8.49□□□□□ -1.05
MSH6P52701 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC8.49□□□□□ -1.05
MSH6P52701 RPA2P2-201ENST00000419698 796 ntBASIC8.49□□□□□ -1.05
MSH6P52701 AL662874.1-201ENST00000426065 230 ntBASIC8.49□□□□□ -1.05
MSH6P52701 AC092017.2-201ENST00000427600 362 ntBASIC8.49□□□□□ -1.05
MSH6P52701 AC126120.1-201ENST00000431082 470 ntBASIC8.49□□□□□ -1.05
MSH6P52701 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC8.49□□□□□ -1.05
MSH6P52701 Z84478.1-201ENST00000438230 1219 ntBASIC8.49□□□□□ -1.05
MSH6P52701 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC8.49□□□□□ -1.05
MSH6P52701 AL162427.1-201ENST00000450399 439 ntTSL 5 BASIC8.49□□□□□ -1.05
MSH6P52701 AC005532.2-201ENST00000467154 373 ntBASIC8.49□□□□□ -1.05
MSH6P52701 RN7SL30P-201ENST00000488416 306 ntBASIC8.49□□□□□ -1.05
MSH6P52701 AC008953.1-201ENST00000497334 318 ntBASIC8.49□□□□□ -1.05
MSH6P52701 MINCR-206ENST00000524335 499 ntTSL 2 BASIC8.49□□□□□ -1.05
MSH6P52701 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC8.49□□□□□ -1.05
MSH6P52701 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC8.49□□□□□ -1.05
MSH6P52701 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC8.49□□□□□ -1.05
MSH6P52701 RN7SL544P-201ENST00000617232 284 ntBASIC8.49□□□□□ -1.05
MSH6P52701 AC008115.4-201ENST00000619780 775 ntBASIC8.49□□□□□ -1.05
MSH6P52701 RN7SL763P-201ENST00000620922 284 ntBASIC8.49□□□□□ -1.05
MSH6P52701 AC130448.2-201ENST00000624082 374 ntBASIC8.49□□□□□ -1.05
MSH6P52701 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
MSH6P52701 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
MSH6P52701 SYNPO2-202ENST00000429713 9920 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
MSH6P52701 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC8.49□□□□□ -1.05
MSH6P52701 GARNL3-205ENST00000435213 3599 ntTSL 2 BASIC8.49□□□□□ -1.05
MSH6P52701 CUBNP3-201ENST00000457461 1784 ntBASIC8.49□□□□□ -1.05
MSH6P52701 GABRB2-209ENST00000612710 2470 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
MSH6P52701 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC8.49□□□□□ -1.05
MSH6P52701 TMEM269-204ENST00000637012 3354 ntAPPRIS ALT2 TSL 5 BASIC8.49□□□□□ -1.05
MSH6P52701 DAZ1-201ENST00000382510 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC8.49□□□□□ -1.05
MSH6P52701 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC8.49□□□□□ -1.05
MSH6P52701 ITPR1-201ENST00000302640 10197 ntAPPRIS ALT1 TSL 5 BASIC8.49□□□□□ -1.05
MSH6P52701 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC8.48□□□□□ -1.05
MSH6P52701 SNORA43.1-201ENST00000364863 140 ntBASIC8.48□□□□□ -1.05
MSH6P52701 AC016739.1-201ENST00000405359 345 ntBASIC8.48□□□□□ -1.05
MSH6P52701 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC8.48□□□□□ -1.05
MSH6P52701 KIF4CP-201ENST00000422742 1279 ntBASIC8.48□□□□□ -1.05
MSH6P52701 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
MSH6P52701 AC026254.2-201ENST00000475295 371 ntBASIC8.48□□□□□ -1.05
MSH6P52701 RN7SL57P-201ENST00000493687 290 ntBASIC8.48□□□□□ -1.05
MSH6P52701 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC8.48□□□□□ -1.05
MSH6P52701 HMGN2P36-201ENST00000529541 409 ntBASIC8.48□□□□□ -1.05
MSH6P52701 AC092865.1-201ENST00000544395 1023 ntBASIC8.48□□□□□ -1.05
MSH6P52701 HAUS8P1-201ENST00000549005 542 ntBASIC8.48□□□□□ -1.05
MSH6P52701 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC8.48□□□□□ -1.05
MSH6P52701 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC8.48□□□□□ -1.05
MSH6P52701 AC009120.3-201ENST00000563335 499 ntBASIC8.48□□□□□ -1.05
MSH6P52701 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC8.48□□□□□ -1.05
MSH6P52701 AC104984.1-201ENST00000581633 697 ntTSL 3 BASIC8.48□□□□□ -1.05
MSH6P52701 RPSAP73-201ENST00000614820 330 ntBASIC8.48□□□□□ -1.05
MSH6P52701 POLA1-202ENST00000379068 5486 ntAPPRIS ALT2 TSL 5 BASIC8.48□□□□□ -1.05
MSH6P52701 RAB6C-AS1-201ENST00000412425 2454 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
MSH6P52701 HEATR1-202ENST00000366581 6538 ntTSL 5 BASIC8.48□□□□□ -1.05
MSH6P52701 AC123769.2-201ENST00000624332 5984 ntBASIC8.48□□□□□ -1.05
MSH6P52701 AC092821.3-202ENST00000641304 2767 ntBASIC8.48□□□□□ -1.05
MSH6P52701 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC8.48□□□□□ -1.05
MSH6P52701 CTNNA1P1-201ENST00000515849 2728 ntBASIC8.48□□□□□ -1.05
MSH6P52701 PREPL-203ENST00000378520 2308 ntTSL 5 BASIC8.48□□□□□ -1.05
MSH6P52701 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC8.48□□□□□ -1.05
MSH6P52701 ZNF333-203ENST00000540689 3595 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms