Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 ASXL1-208ENST00000555343 1034 ntTSL 5 BASIC5.69□□□□□ -1.5
SOX2P48431 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC5.69□□□□□ -1.5
SOX2P48431 NPM1P5-201ENST00000557228 838 ntBASIC5.69□□□□□ -1.5
SOX2P48431 AP003115.1-201ENST00000569849 463 ntBASIC5.69□□□□□ -1.5
SOX2P48431 AP001122.1-201ENST00000572256 541 ntTSL 4 BASIC5.69□□□□□ -1.5
SOX2P48431 RN7SL311P-201ENST00000579858 306 ntBASIC5.69□□□□□ -1.5
SOX2P48431 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC5.69□□□□□ -1.5
SOX2P48431 AC135178.4-201ENST00000585275 548 ntTSL 2 BASIC5.69□□□□□ -1.5
SOX2P48431 AC005242.1-201ENST00000585658 438 ntBASIC5.69□□□□□ -1.5
SOX2P48431 AC024451.4-201ENST00000602578 752 ntBASIC5.69□□□□□ -1.5
SOX2P48431 AC027334.1-201ENST00000603257 310 ntBASIC5.69□□□□□ -1.5
SOX2P48431 AC013244.3-201ENST00000605614 388 ntBASIC5.69□□□□□ -1.5
SOX2P48431 AC083964.1-201ENST00000607549 630 ntBASIC5.69□□□□□ -1.5
SOX2P48431 AP000864.1-201ENST00000609424 650 ntBASIC5.69□□□□□ -1.5
SOX2P48431 AC004801.6-201ENST00000616571 978 ntBASIC5.69□□□□□ -1.5
SOX2P48431 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC5.69□□□□□ -1.5
SOX2P48431 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC5.69□□□□□ -1.5
SOX2P48431 MIR665-201ENST00000635949 72 ntBASIC5.69□□□□□ -1.5
SOX2P48431 LINC00598-209ENST00000635966 1148 ntTSL 5 BASIC5.69□□□□□ -1.5
SOX2P48431 LINC00682-204ENST00000637677 931 ntTSL 5 BASIC5.69□□□□□ -1.5
SOX2P48431 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SOX2P48431 GLYATL1P1-201ENST00000528297 1607 ntBASIC5.69□□□□□ -1.5
SOX2P48431 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SOX2P48431 TEX11-204ENST00000395889 3133 ntAPPRIS P3 TSL 2 BASIC5.69□□□□□ -1.5
SOX2P48431 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC5.69□□□□□ -1.5
SOX2P48431 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.69□□□□□ -1.5
SOX2P48431 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC5.69□□□□□ -1.5
SOX2P48431 TEK-204ENST00000519097 3836 ntTSL 2 BASIC5.69□□□□□ -1.5
SOX2P48431 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC5.69□□□□□ -1.5
SOX2P48431 PKIA-AS1-202ENST00000522302 2011 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SOX2P48431 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
SOX2P48431 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SOX2P48431 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC5.69□□□□□ -1.5
SOX2P48431 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SOX2P48431 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
SOX2P48431 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SOX2P48431 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC5.68□□□□□ -1.5
SOX2P48431 CYP3A5-201ENST00000222982 1720 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SOX2P48431 ZNF600-201ENST00000338230 3829 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SOX2P48431 FHL5-203ENST00000541107 1904 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SOX2P48431 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
SOX2P48431 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
SOX2P48431 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SOX2P48431 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SOX2P48431 RPL7-201ENST00000352983 1101 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SOX2P48431 RNA5SP350-201ENST00000363298 111 ntBASIC5.68□□□□□ -1.5
SOX2P48431 TMA16P2-201ENST00000413187 601 ntBASIC5.68□□□□□ -1.5
SOX2P48431 OR13Z1P-201ENST00000416141 834 ntBASIC5.68□□□□□ -1.5
SOX2P48431 AL121823.1-201ENST00000418369 741 ntTSL 3 BASIC5.68□□□□□ -1.5
SOX2P48431 CLIC4P3-201ENST00000422221 752 ntBASIC5.68□□□□□ -1.5
SOX2P48431 SPATA20P1-201ENST00000423089 438 ntBASIC5.68□□□□□ -1.5
SOX2P48431 RPS10P21-201ENST00000430654 475 ntBASIC5.68□□□□□ -1.5
SOX2P48431 AP001628.1-201ENST00000431150 285 ntTSL 5 BASIC5.68□□□□□ -1.5
SOX2P48431 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC5.68□□□□□ -1.5
SOX2P48431 AC114402.2-201ENST00000432760 643 ntBASIC5.68□□□□□ -1.5
SOX2P48431 AL606490.7-201ENST00000433136 191 ntBASIC5.68□□□□□ -1.5
SOX2P48431 GAPDHP75-201ENST00000433910 943 ntBASIC5.68□□□□□ -1.5
SOX2P48431 LINC01771-201ENST00000445039 567 ntTSL 4 BASIC5.68□□□□□ -1.5
SOX2P48431 LIX1L-AS1-207ENST00000448561 347 ntTSL 3 BASIC5.68□□□□□ -1.5
SOX2P48431 RPS3AP53-201ENST00000454716 778 ntBASIC5.68□□□□□ -1.5
SOX2P48431 AC135999.1-201ENST00000478962 479 ntBASIC5.68□□□□□ -1.5
SOX2P48431 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC5.68□□□□□ -1.5
SOX2P48431 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC5.68□□□□□ -1.5
SOX2P48431 MTCO3P27-201ENST00000514397 196 ntBASIC5.68□□□□□ -1.5
SOX2P48431 AC016550.3-201ENST00000515706 767 ntBASIC5.68□□□□□ -1.5
SOX2P48431 AC011410.1-201ENST00000524175 705 ntTSL 5 BASIC5.68□□□□□ -1.5
SOX2P48431 MIR4800-201ENST00000537353 80 ntBASIC5.68□□□□□ -1.5
SOX2P48431 LINC02413-201ENST00000549914 723 ntTSL 5 BASIC5.68□□□□□ -1.5
SOX2P48431 MTND1P24-201ENST00000552175 861 ntBASIC5.68□□□□□ -1.5
SOX2P48431 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC5.68□□□□□ -1.5
SOX2P48431 MIR378C-201ENST00000578683 81 ntBASIC5.68□□□□□ -1.5
SOX2P48431 AC233702.7-202ENST00000582941 211 ntBASIC5.68□□□□□ -1.5
SOX2P48431 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC5.68□□□□□ -1.5
SOX2P48431 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC5.68□□□□□ -1.5
SOX2P48431 LAPTM4BP2-201ENST00000604542 446 ntBASIC5.68□□□□□ -1.5
SOX2P48431 AC024589.2-201ENST00000605642 1294 ntBASIC5.68□□□□□ -1.5
SOX2P48431 AC015849.2-201ENST00000605738 409 ntBASIC5.68□□□□□ -1.5
SOX2P48431 PTCHD3P1-201ENST00000612350 537 ntBASIC5.68□□□□□ -1.5
SOX2P48431 uc_338.33-201ENST00000614988 170 ntBASIC5.68□□□□□ -1.5
SOX2P48431 MIR1264-201ENST00000616374 69 ntBASIC5.68□□□□□ -1.5
SOX2P48431 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SOX2P48431 ALKAL2-208ENST00000619265 496 ntTSL 2 BASIC5.68□□□□□ -1.5
SOX2P48431 AC140479.4-205ENST00000636339 820 ntBASIC5.68□□□□□ -1.5
SOX2P48431 ST7-203ENST00000393443 2360 ntTSL 2 BASIC5.68□□□□□ -1.5
SOX2P48431 TMEM161BP1-201ENST00000457388 1457 ntBASIC5.68□□□□□ -1.5
SOX2P48431 AC067942.1-201ENST00000488045 1493 ntBASIC5.68□□□□□ -1.5
SOX2P48431 LINC01505-203ENST00000435485 1686 ntTSL 5 BASIC5.68□□□□□ -1.5
SOX2P48431 AC068769.1-201ENST00000474767 2426 ntBASIC5.68□□□□□ -1.5
SOX2P48431 PTPN2-212ENST00000591497 3390 ntTSL 5 BASIC5.68□□□□□ -1.5
SOX2P48431 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SOX2P48431 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC5.68□□□□□ -1.5
SOX2P48431 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
SOX2P48431 AC104662.2-201ENST00000512921 1388 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
SOX2P48431 AC130360.2-201ENST00000533477 1556 ntBASIC5.67□□□□□ -1.5
SOX2P48431 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SOX2P48431 OR2A3P-202ENST00000641249 1776 ntBASIC5.67□□□□□ -1.5
SOX2P48431 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SOX2P48431 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SOX2P48431 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
SOX2P48431 OR5M2P-202ENST00000641241 4242 ntBASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms